Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00224 ATGCTTTCAGCTTTTCCTCTTCACTCACATCTGACAACTATTTGGTTTACTAATGGTGAACAGAGCTCTTGCTTTCCACAAAGGATTAAAAGTGCAGTGATGACATTTGGGACTATTTTTAAGAGCTTGTGTTATATACATGTTGTCAAGACCTATCTGATCGACCCTCTTGGGACAATTGGTCCTAGCATGCTTCCTACAATCGATTCGACATTAAGTATCTTCTTGACTGAAAAGATCTCAACCCGATTTGGTAAAGTTGATCGTGGAGATATTGTAGTCTTTTGCGACCCTCAAAAACCTGGGCATTATCTGACCAAACGTGTGATTGGATTGGAGGGTGATAGTATTACATACAGTTCCAATCCTGAGACCAATGACTTGGTGGATGATAATTTTACACACATTTCCTATCCCGAGAACAATGATAAGCCTCAGACGGTTGTGGTTCGAAAGGGTAGCATTTGGGTAGAGGGAGATAACAAGTCTTATAGCCGTGATTCTAGAAAATTTGGTCCTGTTCCTTATGGCCTTATTCAGAGTAAGATATTCTGGAAGAGATTCAAATTGCTTTTGCGTTCTGTTGCTAGATCCATTGGTAATTCTATTGGAAATCTGAAGTTAAGTGACTGTGCATGGTACGTGGCAGCTACTGTTGTCGTGACAGTCAAGGGCAGCATATATTGGGAAATTAGGGCTTTTGCAGTGGAGTTCTGTTTGAGTGTTTGGAAGCAACGAGGTGGTCGAAGCATCACCGTTGAAGACGAATTTTGGTTCTCCGTTCTGGAAGACATTGGTCGAAGCAACGAGGTTCTCTTTCTTCGAAGCGAACAAGTTGAAGTTGTTTTCCCCCATGGATCTTGTCTTCTTGTCCCCGTCATATGTTCTGTTGTGGTCCATTTTACTGTGTTGTGGTACCTTTATTCTGTTGTGGTCCCAAGTTGCAAATGTAGTGGTCCCAGGTGCGTAGTGTTTGTTGTCTTTTGTAAGGTTGAAGCTGTGGCTGTTATTTAA 1014 0.4181 MLSAFPLHSHLTTIWFTNGEQSSCFPQRIKSAVMTFGTIFKSLCYIHVVKTYLIDPLGTIGPSMLPTIDSTLSIFLTEKISTRFGKVDRGDIVVFCDPQKPGHYLTKRVIGLEGDSITYSSNPETNDLVDDNFTHISYPENNDKPQTVVVRKGSIWVEGDNKSYSRDSRKFGPVPYGLIQSKIFWKRFKLLLRSVARSIGNSIGNLKLSDCAWYVAATVVVTVKGSIYWEIRAFAVEFCLSVWKQRGGRSITVEDEFWFSVLEDIGRSNEVLFLRSEQVEVVFPHGSCLLVPVICSVVVHFTVLWYLYSVVVPSCKCSGPRCVVFVVFCKVEAVAVI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00224 337 Pfam Signal peptidase, peptidase S26 37 179 IPR019533 GO:0004252|GO:0006465
Vimu5g00224 337 SUPERFAMILY LexA/Signal peptidase 51 187 IPR036286 -
Vimu5g00224 337 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 28 187 - -
Vimu5g00224 337 ProSitePatterns Signal peptidases I signature 3. 155 168 IPR019758 GO:0004252|GO:0016020
Vimu5g00224 337 CDD S26_SPase_I 61 183 IPR019533 GO:0004252|GO:0006465
Vimu5g00224 337 Gene3D Umud Fragment, subunit A 61 189 - -
Vimu5g00224 337 PRINTS Bacterial leader peptidase 1 (S26A) family signature 150 169 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu5g00224 337 PRINTS Bacterial leader peptidase 1 (S26A) family signature 52 68 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu5g00224 337 PRINTS Bacterial leader peptidase 1 (S26A) family signature 105 117 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu5g00224 337 NCBIfam signal peptidase I 38 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00224 Vimu-Chr5 2107065 2109433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00224 64 186 MADS-box Gene Family AT1G29960 42.276 9.43e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00224 K09647 - gmx:100526949 201.83