Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00222 ATGATTGCGTGGGTGTTGCGGTGGGGCGTAGTCCGCGAGGCAGCAGATTGGGATGAAGTTGAAGAAGTCAGCGGATGGCGAAGGATATGTGCACCTAAACACATGGGGTCATCAAGAAGTTTTCTATGGAACTGCACTAATAAATTTGTCACACCTGCTGTCATGGCTGTGACTACGTTTGATTGTTTTGCCACAGTTGTTCCTGTTCTAGATGGCTCTATGTCTCCCACATTAAATCCTAAAACTGGTTCTCTTATGGGAAATGTTTTTTGTATTTTTCTTGCTGAAGGACAATTTTGCCTTTTGGACTACGAATTTTCAAATGGCGATGTGGTGGTCTTCCGCTCCCCAACGAATCACAAGGAGACAGACATAAAAAGAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACAACGATGTGATTAAGATCCCATTAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGGCCTAATTCGGGGAAGGGTTACACATGTAGTGTGGCCTCCTCAAAGAATAGGAAGTGTCAAGAGTACTCCACCACAAAGATTATCTTCTGTATTGGAATAA 621 0.4364 MIAWVLRWGVVREAADWDEVEEVSGWRRICAPKHMGSSRSFLWNCTNKFVTPAVMAVTTFDCFATVVPVLDGSMSPTLNPKTGSLMGNVFCIFLAEGQFCLLDYEFSNGDVVVFRSPTNHKETDIKRIAALPGEWYGTHHNNDVIKIPLGHCWVEGDNSASSIDSKSFGPIPLGLIRGRVTHVVWPPQRIGSVKSTPPQRLSSVLE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00222 206 FunFam Mitochondrial inner membrane protease subunit 60 198 - -
Vimu5g00222 206 Gene3D Umud Fragment, subunit A 61 198 - -
Vimu5g00222 206 Pfam Signal peptidase, peptidase S26 142 185 IPR019533 GO:0004252|GO:0006465
Vimu5g00222 206 Pfam Signal peptidase, peptidase S26 46 134 IPR019533 GO:0004252|GO:0006465
Vimu5g00222 206 PRINTS Bacterial leader peptidase 1 (S26A) family signature 62 78 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu5g00222 206 PRINTS Bacterial leader peptidase 1 (S26A) family signature 147 166 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu5g00222 206 PRINTS Bacterial leader peptidase 1 (S26A) family signature 124 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu5g00222 206 CDD S26_SPase_I 66 180 IPR019533 GO:0004252|GO:0006465
Vimu5g00222 206 SUPERFAMILY LexA/Signal peptidase 63 193 IPR036286 -
Vimu5g00222 206 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 35 199 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00222 Vimu-Chr5 2086507 2098642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00222 74 197 MADS-box Gene Family AT1G29960 39.231 8.85e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00222 K09648 - gmx:100527429 271.166