Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00214 ATGAACATGTTAGGCCTCAGAGACTTGGTCCTCATAGCTCCAACCCCTTCTCAACTTCATCACCATCAACACCAACACCAACACCAACACCAGCATCAGCACCAACACCACCCCATTTCAGCAGAACACCATCCCAACCTTGCCTTGCCTTCTCCAGCTTCTCTCAGTGTTGGCCTTGGCATTTTCCCTCTGCTAACCGTTCCACACACCAATGATGTTCATGATCAGGTTCAGGACTGTGCCAACAACAACACCACCACCAACCACAACACCAACTACTGGAACCTCAAGATGTGTGGTGTCTCAGAAGTGAATTCCACCAGAAAAGGTGTCATGAACGTGGAAGATGAGGCGAGCAACAAGCATGTGATGGAGAGTGAGGAAAGTGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTACAAGAGGTGCAGGACTTGCTGCAAAGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCAGCCTCTCTCAGACGCAGTGGTGGTAACAGTGGTAGTGATGGTAACGGTGATGGAGATGGTGATGGTGGTGCTTCTAAGAGGCTAAGAACAATAGGGTCCTCCAAGAATGTTGCAGCTACTTCTCTTAGTTCAACTTCCAATGCTACCCCATCAAAGAGCTTTAGCTTAGACACTAGCTCATGTCAACAAGATGCTGGATTCAAGCAATCTTTGCCACGGCATGTGCGTGCACCTGCTGTTTTTAGGTGCCACAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCCTACTTGGCCACAGTGCATATCAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCCAGTGTCTCTGAGCTGCAACTGGGAAACAATGGAAGTGGAAAGAGTAATAATAATAGGGAATGTTCTTCTGCAATCGGGGTTCCAACCAGTGCTTACCCTGCTTCTGTTTGCTGA 1005 0.4915 MNMLGLRDLVLIAPTPSQLHHHQHQHQHQHQHQHQHHPISAEHHPNLALPSPASLSVGLGIFPLLTVPHTNDVHDQVQDCANNNTTTNHNTNYWNLKMCGVSEVNSTRKGVMNVEDEASNKHVMESEESGEFRVCQDCGNRAKRDCSYKRCRTCCKGRGFDCSTHVKSTWVPASLRRSGGNSGSDGNGDGDGDGGASKRLRTIGSSKNVAATSLSSTSNATPSKSFSLDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKSNNNRECSSAIGVPTSAYPASVC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00214 334 Pfam Domain of unknown function (DUF702) 134 291 - -
Vimu5g00214 334 MobiDBLite consensus disorder prediction 173 227 - -
Vimu5g00214 334 MobiDBLite consensus disorder prediction 299 319 - -
Vimu5g00214 334 NCBIfam LRP1 C-terminal domain 243 289 IPR006511 -
Vimu5g00214 334 NCBIfam putative zinc finger domain, LRP1 type 134 175 IPR006510 -
Vimu5g00214 334 MobiDBLite consensus disorder prediction 17 50 - -
Vimu5g00214 334 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 317 IPR007818 GO:0003700|GO:0006355
Vimu5g00214 334 MobiDBLite consensus disorder prediction 201 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00214 Vimu-Chr5 1982255 1983778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00214 1 325 C2H2 Transcription Factor Family AT5G12330 38.824 6.22e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu5g00214 DUF702 3.6e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00214 - - gmx:100790311 521.931