Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00213 ATGGCTGGTTTTGATTTTCATGAAACATTTTCACCAGTCATCAAACCTGTTACTATTTGCATAATTTTAATTGTTGCTCTTTCTTTTGGGTGGAAGTTGTTTCAACTGAACGTGAATAATGCCTTTTTGAATGGTATTTTGGAAGGAACTGTCTATATGCAGCAACCTCCTAGTTTTGAGGTGGCTGACAAGACTATTGTCTGCAAGTTAAATAAGGCGCTCTATGGGCTCAAGCTAGCCCCAGACAATGGTTCAATCGCTTACAGCACACTCTTCATCAGCTCGGACCCTACCTTATATAGGTCTGTGGTGGGGATGTTGCAGTATGCTACTCTTACACGGCCCGAAATCAGCTTTGCTGTAAATAAAGTCTGCCAGTTTATGGCACAACCTCTTGACTCTCACTGGAACCCAGCGGCTTTTAATTGTTCTGTACCCCTGCTCGCTCCAGCACTGAAGCTAAATACAGAATCTCCATTCCACATAACCCAGTTTTTCACAACAGGACCAACCAAACAAATGGAAATTGATGTGTTCTTTGTTCGTGAGAAGACTTTGTTGAAGCAGCTGCAAGTCTCTCATGTTCCAGACCTTGATCAGTGGGCATATGCCCTGACAAAGCCTCTCTCTTCCTCTTGGTTCATTTTTCTACGTTCCAAACTCAATGATTTGATTAACAAAGTTGGCCATACCTTGAGCGAATGGATTTATATTGGTGGTGTTAAAGCTTTTGCTGATGGGTCTTTGGGTTCCAATAGTGCATTGCTTTATGAGCCATATGTTGATGAGCCAGACAACTATGGTTTACAAGTGACTGAACCTGAAGCACTTCTCAACATGACCTTGGAGTCTGATTTATATGGTCTACAGGTCGCTATTCATGCTATAGGAGACAAAACAAATGACCTTATCTTGGACCTATATAGTTCAGTAGCTTCTGCAAATGGTATGAGAGATCGAAGATTCAGGATTGAGCATGCCCAGCAGTTGGCAGCCGGAACCCCTGGCCGATTTGGTAAACAAAGGGTTGTTGCTTCCATGCAGCCAGATCAATTGTTGGATGATGCTGACTCTACTAGCAAAAAGCTTGGCAAGGATAGGGCAGACACAGAATCATATTTATTTCGGTCACTCTTAAATAACAATGCATTAGTGGCATTTGGTTCTGACTGGCCGGTGGTAGACATCAATCCCTTAAGTGGCATTAAGACAGCAATGAAGAGGAAGCCTCCCACTTGGAAAAGTGCATGGATTCCATCCGAATGCATTTCACTAGATGATGCAATAAAGGCTTACACCATTTCTGCTGCTCATGCAAGCTTCCTTGACAAAGATCTTGGGTCCTTATCTCCAGGGAAACTGGCAGATTTTGTCATATTGTCCACTGATTCATGGCAAGACTTTGCTGAAGATGCATCTGCATCTATTGAGCAAACATACGTTTCTGGTGTGAGAGCATATCCTTGA 1467 0.4281 MAGFDFHETFSPVIKPVTICIILIVALSFGWKLFQLNVNNAFLNGILEGTVYMQQPPSFEVADKTIVCKLNKALYGLKLAPDNGSIAYSTLFISSDPTLYRSVVGMLQYATLTRPEISFAVNKVCQFMAQPLDSHWNPAAFNCSVPLLAPALKLNTESPFHITQFFTTGPTKQMEIDVFFVREKTLLKQLQVSHVPDLDQWAYALTKPLSSSWFIFLRSKLNDLINKVGHTLSEWIYIGGVKAFADGSLGSNSALLYEPYVDEPDNYGLQVTEPEALLNMTLESDLYGLQVAIHAIGDKTNDLILDLYSSVASANGMRDRRFRIEHAQQLAAGTPGRFGKQRVVASMQPDQLLDDADSTSKKLGKDRADTESYLFRSLLNNNALVAFGSDWPVVDINPLSGIKTAMKRKPPTWKSAWIPSECISLDDAIKAYTISAAHASFLDKDLGSLSPGKLADFVILSTDSWQDFAEDASASIEQTYVSGVRAYP 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00213 488 Gene3D - 193 445 - -
Vimu5g00213 488 PANTHER IMIDAZOLONEPROPIONASE 223 487 - -
Vimu5g00213 488 SUPERFAMILY Metallo-dependent hydrolases 237 448 IPR032466 -
Vimu5g00213 488 Pfam Amidohydrolase family 223 487 IPR013108 -
Vimu5g00213 488 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2 82 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00213 Vimu-Chr5 1955842 1961720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00213 3 93 Receptor kinase-like Gene Family AT4G23160 38.542 2.10e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00213 - - var:108340389 534.643