Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00172 TTGCTGGGTGGTGCTCTTCCATTCCCTGCTCTCTGTTCGAAGCGTTTCGTTGGTTTGAAGCGTGAGGTTGTTGCCCTAAGACGGTTTGAAGCGGTTTCTGTTGCGGACGCTGACGGCGGTTCGTTGGTGGCTGGTTTGCGGCTAGGGTTCTTTGGCGACTTGGTTTGGGATTGGGCCGCGAATGTTGTTGTCGGAGATGTTAAGGCAGAGAAGGAGGCAGAAGTTTTTGTGAAGGTCAAGGAAGCGGAGGAGAGATTCGGCAAAGTGATGATACAGGTGGGGTGCATCGAGCCCGTCATGGTCCTCCGTGTCCACAAGGAAAAGGATTACATCGATCTCAGAGAGCGTAGGGTCTACGAAGAGGATATTCAGGCCTGCGAGGAGAGATACAACAAGAGCAAGCTTGTCCACTCCATCATGCGCCAAATTGCTGAAATCCTTAACATCGATTTGGAGGAGCTCTATGTTTACATTGGAGGTCATGCTTTTGAGAACCCAACATGTTATTCCTGCAATCTCCTGTTGGAATTGGCTTTTCATACTCATACAAGCGGTGACTATGACCAATTGGGAGATGATTTAATAGGTCATAGCTGCGACACTAGGGGTCGATATCGTGGAAGGGTCGTGGCTTTAGATCAAATGGACCGATCCAAGCAGTTGAATGAGGCAACTAGTTGTCTGGCATGA 690 0.4942 MLGGALPFPALCSKRFVGLKREVVALRRFEAVSVADADGGSLVAGLRLGFFGDLVWDWAANVVVGDVKAEKEAEVFVKVKEAEERFGKVMIQVGCIEPVMVLRVHKEKDYIDLRERRVYEEDIQACEERYNKSKLVHSIMRQIAEILNIDLEELYVYIGGHAFENPTCYSCNLLLELAFHTHTSGDYDQLGDDLIGHSCDTRGRYRGRVVALDQMDRSKQLNEATSCLA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00172 229 Gene3D Translation initiation factor 2; subunit 1; domain 2 120 165 IPR024054 -
Vimu5g00172 229 SUPERFAMILY eIF2alpha middle domain-like 118 159 IPR024054 -
Vimu5g00172 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 90 160 IPR011488 GO:0003723|GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00172 Vimu-Chr5 1415903 1418497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00172 90 164 Eukaryotic Initiation Factors Gene Family AT2G40290 73.171 4.11e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00172 K03237 - vra:106765684 216.083