Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00168 ATGTCATGCTTTTCTTCTCTTCTTGTTCTTCTGTGTCTCTACAACCTCTCTTTCTTAGAAGCTCTAAATGGTGGATTCAGTGTGGAGATAATCCACCGTGATTCACCAAAATCACCGTTCTATAGTTCCTCAGAAACAAAATTCCAAAGGGTTTCCAATGCTCTGCGTCGTTCCATAAACCGTGGCAACCATTTCAGCAAATCCATGATGTTTCCAAACACAGTAAGCGCAACTGTGATACCAGATCTTGGTGAATATTTAATGAGTTATGCAGTTGGAACTCCACCGCGTAAGGTGTTTGGAGTTCTTGATACAGGCAGTGACATCATTTGGATGCAATGCGAACCATGTAGAAATTGTTTCAAACAGGACACACCTGTGTTTAATCCTTCAAAATCCACAACATACAAAACCATCCCTTGCAGTTCTACCATATGCCATTCTGTGCTAGGTACCTTTTGCTCCTCTTCTAGCATCACCAAAAACTGTAAATATGATATCAATTATGGTGATGGTTCATTCTCACATGGAGATTTGAGTGTGGAGACCCTCACTTTAGGCTCCACCAATGGATCTCCCATCCCACTTCCAAGAACTGCAATAGGGTGTGGTCATAACAATAGCATCAACTTCAAAGGGATAAATTCTGGCATTGTTGGCCTAGGACGTGGACCTGTGTCCCTTATAAATCAATTGGGTTCTTCAGCAGGTTGGAAGTTTTCTTATTGTTTGGTCCCAGCAACTCTGAATTCCAAAGTATCTAGCAGACTCAATTTTGGAGATGCTGCTGCGGTTCAAGGACCTGGAACTGTCTCAACCCCATTGTTTTCTAAACCTCAACAAGTATTTTACTACCTAACCCTAGAAGGGTTCAGTGTGGGAAGACATAGAAGAGAATTTGGAAGCTCTTTGTCTAGATTTGGAGGAGAGGGAAATACCGTAATTGACTCAGGTACAACACTGACTCTTTTGCCAGATGATGTTTACAAATGGTTGGAATCAGCGGTGTCACATGCAGTTAAACTGAAGCCTGTTCAGGATCCAAATCAGGTGTTAGGACTCTGCTACAAAGGTACATTGGATAAACTAAATATTCCAGTGATCACAGCACACTTTAGAGGGGCTAATGTGTTGCTGCATCCTATGAACACCTTTGTTGAAGTGGCTGATAAGGTTTGGTGTTTGGCTTTTCAGCCAACTCAAAACGGTTTTGGTGTGTGCGGCGGTGTAGCCTGTGCGCGCGGCGGTGTGGCGGGTTTTTGCGGAGGTGCAGCGGTGTTCGGTGGTGCATTTTTGTCTCGACAGGTTGTCTGA 1314 0.4353 MSCFSSLLVLLCLYNLSFLEALNGGFSVEIIHRDSPKSPFYSSSETKFQRVSNALRRSINRGNHFSKSMMFPNTVSATVIPDLGEYLMSYAVGTPPRKVFGVLDTGSDIIWMQCEPCRNCFKQDTPVFNPSKSTTYKTIPCSSTICHSVLGTFCSSSSITKNCKYDINYGDGSFSHGDLSVETLTLGSTNGSPIPLPRTAIGCGHNNSINFKGINSGIVGLGRGPVSLINQLGSSAGWKFSYCLVPATLNSKVSSRLNFGDAAAVQGPGTVSTPLFSKPQQVFYYLTLEGFSVGRHRREFGSSLSRFGGEGNTVIDSGTTLTLLPDDVYKWLESAVSHAVKLKPVQDPNQVLGLCYKGTLDKLNIPVITAHFRGANVLLHPMNTFVEVADKVWCLAFQPTQNGFGVCGGVACARGGVAGFCGGAAVFGGAFLSRQVV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00168 437 Gene3D Acid Proteases 63 259 IPR021109 -
Vimu5g00168 437 Pfam Xylanase inhibitor N-terminal 86 261 IPR032861 -
Vimu5g00168 437 SUPERFAMILY Acid proteases 83 409 IPR021109 -
Vimu5g00168 437 CDD pepsin_A_like_plant 85 411 IPR034161 -
Vimu5g00168 437 PANTHER OS07G0603500 PROTEIN-RELATED 28 411 - -
Vimu5g00168 437 FunFam Probable aspartic protease At2g35615 65 260 - -
Vimu5g00168 437 ProSiteProfiles Peptidase family A1 domain profile. 86 437 IPR033121 -
Vimu5g00168 437 Gene3D Acid Proteases 260 432 IPR021109 -
Vimu5g00168 437 Pfam Xylanase inhibitor C-terminal 284 400 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00168 Vimu-Chr5 1384414 1387221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00168 68 358 Miscellaneous Gene Families AT1G44130 29.000 7.41e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00168 - - gmx:100790610 499.975