Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00159 ATGATAGTGTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGATTGTATAATAATTTTAAATGAATCACATAATGACACGGACATTTTTTGGGAAAACCATGTGGTTTATGATGAGTGGTGGACGGTGTTTTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACATTACTGGGAAAATGGGATCCTCTGGAGAGAGAATCTTTCAGGAAGAAGACACCACATTTATTCACTGAGGATCATGAACGCCATTTTCAGAGGTGGGATGATCACTATGTTCATCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGTTGTGGTCCATGCACCCTTGGGAAAGAGATGCCCGTTTAGTAAGAGAGGCCCTAAAGAAGGGCCAAAATGCATATGGAGTTTTGGTTGAGGTTGCATGCACTAGATCCTCAGAAGAGCTATTAGGAGCTAGGAAGGCCTATCACTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATTCCATTGAAAGAAAGCTATTGATTGCTCTACTAAGTGCCTATAGATATGAAGGATCCAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAGTCCTCTCTAATGCAATCAAGAATGCTCATAAGAAACCTATTAATGAGGATGATGAAGTGATAAGGATATTGTCAACAAGAAGCAAGCTGCATCTTCAGGCAGTTTACAAGCACTACAATGAGATTTCTGGCAAAAACCTTGATGAGGATCTTGACGACTTAAGATTTAAAGAGACTGTGCAATGCCTTTGTATCCCACAAATATACTTCAGCAAGGTTTTGAATGCAGCATTGAGAATTGATGTGGATAAGAATACTAAGAAATCTCTTACTCGTGTGATTGTTACAAGAGCTGAAATTGATATGAAGGAAATAAAAGCAGAATACCATAACCTATATGGAGTTTCTTTGCCCCAGAAAGTTGAAGAGGTTGCTAGAGGAAACTACAAGGATTTCTTGCTAAATTTGATCGTCAGAGGAGGCTGA 1098 0.3643 MIVFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDCIIILNESHNDTDIFWENHVVYDEWWTVFSGHGVDEKSLVTLLGKWDPLERESFRKKTPHLFTEDHERHFQRWDDHYVHLLKHEFVRFKNAVVLWSMHPWERDARLVREALKKGQNAYGVLVEVACTRSSEELLGARKAYHSLFDHSIEEDVASHIHSIERKLLIALLSAYRYEGSKVKDDTAKSEAKVLSNAIKNAHKKPINEDDEVIRILSTRSKLHLQAVYKHYNEISGKNLDEDLDDLRFKETVQCLCIPQIYFSKVLNAALRIDVDKNTKKSLTRVIVTRAEIDMKEIKAEYHNLYGVSLPQKVEEVARGNYKDFLLNLIVRGG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00159 365 Gene3D Annexin 293 362 IPR037104 GO:0005509|GO:0005544
Vimu5g00159 365 SUPERFAMILY Annexin 63 361 IPR037104 GO:0005509|GO:0005544
Vimu5g00159 365 Pfam Annexin 229 276 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 Pfam Annexin 138 203 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 Pfam Annexin 311 360 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 FunFam annexin D4 292 362 - -
Vimu5g00159 365 FunFam annexin D4 204 291 - -
Vimu5g00159 365 PRINTS Annexin family signature 229 255 IPR001464 GO:0005509|GO:0005544
Vimu5g00159 365 PRINTS Annexin family signature 332 347 IPR001464 GO:0005509|GO:0005544
Vimu5g00159 365 PRINTS Annexin family signature 66 88 IPR001464 GO:0005509|GO:0005544
Vimu5g00159 365 PRINTS Annexin family signature 304 324 IPR001464 GO:0005509|GO:0005544
Vimu5g00159 365 Gene3D Annexin 204 292 IPR037104 GO:0005509|GO:0005544
Vimu5g00159 365 ProSiteProfiles Annexin repeat profile. 134 205 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 PANTHER ANNEXIN 63 360 - -
Vimu5g00159 365 SMART annex3 305 360 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 SMART annex3 150 203 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 SMART annex3 240 287 IPR018502 GO:0005509|GO:0005544
Vimu5g00159 365 Gene3D Annexin 134 203 IPR037104 GO:0005509|GO:0005544
Vimu5g00159 365 FunFam Annexin 134 203 - -
Vimu5g00159 365 ProSiteProfiles Annexin repeat profile. 217 303 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00159 Vimu-Chr5 1322686 1327837 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00159 K17098 - gmx:100796623 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00159 5 1322686 1327837 Vimu5g00159 5 1322686 1327837 ECH