Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00142 ATGGTGAAGGACACTGCGTACTATGACATATTAGGTGTGAACGTTGATGCATCTGCTGCAGATATCAAGAAGGCTTATTATGTCAAGGCAAGAATTGTTCACCCTGATAAAAATCCAGGGGATCCTCAGGCCGCAGAAAATTTTCAGAAACTTGGTGAGGCTTACCAGGTTTTAAGTGACCCCGGGAAGCGTGAAGCATATGATAAATATGGAAAGGAGGGAGTAGTACAAGATAACATGATGGACCCTACCGCTGTATTTGGAATGATTTTCGGAAGTGAAGTTTTTGAAGAATATATTGGGAAACTTGCACTGGCTTCTTTAGCATCTATAGAAATTGATGAAGACATACAGGACCCTGAAGCTCAGAGGCAAAAAATTCAAGAAAAGATGAAAGCATGGCAGAAGGAAAGAGAGCAGAAGCTTTCAGCAATTCTGATAGACCGGCTGCAACTATCGGTTGTTGGTCAAGAAGAGGAATTTACTGCATGGGCAAAGTCAGAAGCTCGTACCCTTTCTAAAGCTGCTTTTGGTGAGGCCATGCTACATACAATTGGTTACATCTACACACGAAAATCTGCAAGAGAACTTGGCAAGGATTTACGGTACATGAATGTTCCCTTTTTGGCTGAGTGGGTTCGAGATAAAGGACACCGTATTAAGTCACAAGTAACAGCAGCCTCAGGAGCTGTGTCCCTAATTCAAATACAAGAAGAGCTCAAGAAGCTAAACCAAGGAGAAAACAAGGAAGAAAGCATAATCAAAGCTATTGAAGATAAGAAGGATGCCATGGTTAATTCTCTATGGCAGATCAATGTGATTGATATTGAATCAACTCTGTCACATGTTTGCCAAGCAGTTCTTAAAGATCCTAGTGCCTCCAAAGATGTTCTGAAGGCTCGGGCCAAAGCATTGAAAAAGTTAGGAAGCATCTTTCAAATGTCACATACAGGAAACAAGCGGAATGCTGAAGGGGTAGAGGCATCAGGGGTTATTTGTGATGGCAAGCTGCACTATGTGATAGTGAATGTTGTTCTGCCCCCACAATGTGGTGGTGAATGTTTGGTGAGATTTAAATAG 1080 0.4194 MVKDTAYYDILGVNVDASAADIKKAYYVKARIVHPDKNPGDPQAAENFQKLGEAYQVLSDPGKREAYDKYGKEGVVQDNMMDPTAVFGMIFGSEVFEEYIGKLALASLASIEIDEDIQDPEAQRQKIQEKMKAWQKEREQKLSAILIDRLQLSVVGQEEEFTAWAKSEARTLSKAAFGEAMLHTIGYIYTRKSARELGKDLRYMNVPFLAEWVRDKGHRIKSQVTAASGAVSLIQIQEELKKLNQGENKEESIIKAIEDKKDAMVNSLWQINVIDIESTLSHVCQAVLKDPSASKDVLKARAKALKKLGSIFQMSHTGNKRNAEGVEASGVICDGKLHYVIVNVVLPPQCGGECLVRFK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00142 359 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vimu5g00142 359 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vimu5g00142 359 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vimu5g00142 359 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vimu5g00142 359 CDD DnaJ 7 60 IPR001623 -
Vimu5g00142 359 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 317 - -
Vimu5g00142 359 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vimu5g00142 359 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vimu5g00142 359 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
Vimu5g00142 359 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Vimu5g00142 359 Gene3D DnaJ domain 1 87 IPR036869 -
Vimu5g00142 359 Pfam DnaJ domain 7 68 IPR001623 -
Vimu5g00142 359 SMART dnaj_3 5 63 IPR001623 -
Vimu5g00142 359 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00142 Vimu-Chr5 1172699 1179982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00142 7 73 Miscellaneous Gene Families AT1G16680 49.275 1.56e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00142 - - gmx:100787075 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00142 5 1172699 1179982 Vimu5g00142 5 1172699 1179982 ECH