Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00138 ATGGTGGAGTATCAAGGCTGGAATGAAAAACGTTGTTGGAAGAAAGAATTGTCACGTCTTTGGAGAAGATTTAATTTTGTCATTGGCTTGCTTTCATCTTTGTTGAATGAGTCAGTGAATTATGCAGATCTGGATTTTTCTTTAAGAAGAAGAATGAAAGGAGGAAGAAGGAAGAGGAAAATGGCGTGGGAGGAAGACAGTGACACGGTGAGACCATTTAGACACATCAGCCCACCACCTCTGCAGAAAACAGTAAAAACAGGGTTTGGTTATGTTACTGTTACTGTTACTGTTTCTGCAGTTGCTGATATACTGCTATGGCAAATGAGAACAGAGAATCTACGGCATTCAGAATCCGAGAATGCTGAAAAAGAGAAAAGCAGAATGCAGGCTCCACATTGTGTGGCTAATTATTGGGAGCAGAGATTGAAGCCGTTAGAGAGAGGAAAATCCCTTATAGGGAATCGAGAAGACCCCATTTCAGGCTTCTTTATTGTTGTTATTGTTCGTTCTAAATTGAAAAAAATCCTCATCCTCATCCTCAACCCCAGGAGAATGGCTTTCATACAACCTTTTCTATCACCCTTCAGCTCATCATCTCTGATGGCTATCCTCCTGGTTTTCATCACCCTTTTCTTTTCCTTCTCCTCTCCTTCATTGGCCTTGTCTCCCTCAGAAATCTTCCAACCAAAAGACAATTTCTTGATCGATTGTGGAGCAGACAGTGTTTCCACCCTCCCTGATGGACGACATTTCAAAACAGACCCTCAAGCAAATTCTTTCTTGAAAGCCAATGATGAGTACAAAGTCAATGCAGAAAATGCAAATTTATCTAGCCCTTTATACAAGAGTGCAAGGATCTTCATCCAGGAAGCAATTTACTCCTTCCATTTGGTCCAGCCAGGTTTTCACTGGGTTCGCCTTCATTTCTACCCCGTCAAGAACAGTGTCTTTGATCTCCAGAAGGCCACTTTCTCTGTCTTCGCCGATACCTACGTTCTTCTCCACAGTTTCAATGTCAACAACACTGACAAGCCAATCCTCAAGGAGTACCTCATCAATGTAACTGAGCCTCAATTCTCTATTTCCTTCATCCCCTTGAAGAACTCAGCCGCATTCATCAATGCCATTGAGGTTGTTTCCGCTCCTGATGACCTTATCTTCGACACCGCCACCAGCCTTTTCCCTGTGGAGGAGTTCTCCGGCATCACATCCTATGGCTTGCAGCCTGTTTTCAGGGTCAACAATGGTGGGCCTCTCATCACCTCATCGAATGATACCCTTGGGAGGACTTGGGATCCTGATGAGGCTTTCCTCACAAACAAGAACTTGGCCAAGAGTGTCTCGGTGGCTACCAATGTGGTTAAATTCCCCCAACACAATCCTGCAATCTCCTCTCTTACAGCTCCACAAACTGTGTATGCTTCTGCCACTGAGATGGCTGATGCTGGTGTTAACCAGCCAAATTTCAACGTCTCGTGGAAATTTGATGTGGACACTTCTTTTAGCTACCTTGTTAGGCTTCACTTCTGTGATATTGTTAGCAAAGGGCTCAATCAACTCTACTTTAATGTGTATATTAATGGGAAAATGGCAATCTCTAACTTTGATTTGTCAGCCACCACGGGTGCCTTGTCAACCCCATATTACAAGGACATTGTGGTGAATGCAACATTGATGACAGAGGAGGGACTATCAATTCAGGTTGGTCCAACCACTGGTGGTAGTGCAAATGCCAATGCCCTTGTGAACGGCATAGAGGTCATCAAGATGAGCAACACTGTGAACAGTTTGGATGGAGAATTCGGGGTTGATGGAAGAAGTGTTAGTGGTTCTAGCCGCGGCACGGTGGCTGCAGTTGGATTTGCCATGATGTTTGGAGCCTTTGTTGGGCTCGGAGCCATGGTGATCAAGTGGCACAAGAGGCCTCAAGACTGGCAGAAGAGGAACAGTTTCTCTTCGTGGTTGCTGCCTCTGCATGCTGGTGATACAAGCTTCATGAGCAGCAAGACCTCGATGGGAAAGAGCAACTTTTTCTCCTCATCAATGGGACTAGGCCGGTACTTCTCTTTCGCTGAACTTCAGGAAGCAACCAAGAATTTTGACTCAAAGAACATCATTGGTGTTGGTGGATTTGGCAATGTGTATTTGGGTGTGATAGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAACCCTCAATCAGAGCAAGGCATCAACGAATTCCAGACTGAAATCCAAATGTTGTCGAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTGGTTTATGAGTACATGCCCAATGGACACTTCAGAGACCATCTTTATGGAAAGAACATGCCTCCTCTCTCATGGAAGCAAAGGCTAGAGATCTGCATTGGTTCAGCTCGTGGCCTTCACTACCTTCACACAGGCACAGCGCAAGGCATCATTCACCGTGATGTCAAGACCACCAACATCTTGCTTGATGAGAATTTGACAGCCAAGGTTTCTGATTTTGGACTTTCCAAGGATGCACCAATGGGGCAGGGACATGTTAGTACTGCAGTGAAGGGCAGCTTTGGTTATCTTGACCCTGAGTACTTCAGAAGACAGCAACTCACAGAAAAATCTGATGTGTACTCCTTTGGGGTGGTTCTGCTTGAGGCACTGTGTGCAAGGCCAGCCATCAACCCTCAGTTGCCCCGTGAACAAGTAAACTTGGCCGATTGGGCGATGCAGTGGAAGAGAAAGGGCTTGCTAGACAAGATCATAGACCCTCAACTGATTGGATCAATCAATCCTGAATCTATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGAGTGGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGGAAAGCCTGAGGAGGCTCCTCCTTCACCTCCCCCACAAGCACCTGCCACTCCTACTGATGACCCTCGGACGCTGTCGCCGGCGCCAGCAGCACCAGCAGCACCAGCGGCGGCAGTGCCACGTGCAGAAGTGAATAATGCTACACCAGAAGTGCATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAACAATCTCAATGGCAGGTGA 3165 0.4622 MVEYQGWNEKRCWKKELSRLWRRFNFVIGLLSSLLNESVNYADLDFSLRRRMKGGRRKRKMAWEEDSDTVRPFRHISPPPLQKTVKTGFGYVTVTVTVSAVADILLWQMRTENLRHSESENAEKEKSRMQAPHCVANYWEQRLKPLERGKSLIGNREDPISGFFIVVIVRSKLKKILILILNPRRMAFIQPFLSPFSSSSLMAILLVFITLFFSFSSPSLALSPSEIFQPKDNFLIDCGADSVSTLPDGRHFKTDPQANSFLKANDEYKVNAENANLSSPLYKSARIFIQEAIYSFHLVQPGFHWVRLHFYPVKNSVFDLQKATFSVFADTYVLLHSFNVNNTDKPILKEYLINVTEPQFSISFIPLKNSAAFINAIEVVSAPDDLIFDTATSLFPVEEFSGITSYGLQPVFRVNNGGPLITSSNDTLGRTWDPDEAFLTNKNLAKSVSVATNVVKFPQHNPAISSLTAPQTVYASATEMADAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNQLYFNVYINGKMAISNFDLSATTGALSTPYYKDIVVNATLMTEEGLSIQVGPTTGGSANANALVNGIEVIKMSNTVNSLDGEFGVDGRSVSGSSRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKTSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENLTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPQLIGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKPEEAPPSPPPQAPATPTDDPRTLSPAPAAPAAPAAAVPRAEVNNATPEVHSIDDHSGTAMFAQFNNLNGR 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00138 1054 Gene3D Transferase(Phosphotransferase) domain 1 777 987 - -
Vimu5g00138 1054 Gene3D - 233 383 - -
Vimu5g00138 1054 Gene3D - 409 593 - -
Vimu5g00138 1054 FunFam receptor-like protein kinase FERONIA 665 776 - -
Vimu5g00138 1054 SMART serkin_6 701 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00138 1054 FunFam Putative receptor-like protein kinase 233 383 - -
Vimu5g00138 1054 FunFam Receptor-like protein kinase FERONIA 407 593 - -
Vimu5g00138 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Vimu5g00138 1054 MobiDBLite consensus disorder prediction 981 1040 - -
Vimu5g00138 1054 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Vimu5g00138 1054 PANTHER OS07G0166700 PROTEIN 687 977 IPR045272 GO:0004714|GO:0006468
Vimu5g00138 1054 MobiDBLite consensus disorder prediction 986 1000 - -
Vimu5g00138 1054 CDD STKc_IRAK 707 971 - -
Vimu5g00138 1054 ProSiteProfiles Protein kinase domain profile. 701 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00138 1054 Pfam Malectin-like domain 236 590 IPR024788 -
Vimu5g00138 1054 Gene3D Phosphorylase Kinase; domain 1 663 776 - -
Vimu5g00138 1054 FunFam Receptor-like protein kinase FERONIA 777 988 - -
Vimu5g00138 1054 SUPERFAMILY Protein kinase-like (PK-like) 684 968 IPR011009 -
Vimu5g00138 1054 Pfam Protein tyrosine and serine/threonine kinase 704 964 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00138 Vimu-Chr5 1114568 1118703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00138 228 1054 Receptor kinase-like Gene Family AT4G39110 67.665 0.0 1181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu5g00138 Malectin_like 4e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00138 - - gmx:100793784 1422.53