Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00126 ATGAGTAATGTTCAAGAAAATGATACACTGAACACTCTTTATGAGGTTTCATTGAGAGGTAGTGTTTCTGAGTTAGAAACTCTGATTGGAAGAGACCCTCTTATCCTTCACAGAATTTCCTTAACAACATTCACTGAAACTCCTTTGCACATATCAGCTTTACTTGGTCACCTTGATTTCACAAAGTCCCTTCTGACTCTCAAACCTCAGCTTGCTCTTGAGACTGACCACTGCAAACGCACCCCTCTTCATCTGGCTTCTGCTGAAGGCCATGTAGAGATTGTTCATGCTTTGCTGCAGACATGTGAAGATGCATGCTTGATGACTGACCAAGATGGAAGGATTCCTCTTCATTATGCAGCTATGAGAGGAAGAACAGAGGTTGCAAGACAGTTGATTAGAGGAGCAAAGTCAGAATCTGTGATGGTGTTTGATGGATCAGGAAAAACTATGTTTCACCTTTGTGTTGAGCACAATCACTTGGAGACTTTGAAAACACTGGTGGAAGTTGGAAATGTCAGGGAGGATTTTCTAAACTGTGGAGACTTTCATCATGGAAATACCATTCTCCATTTGGCTGTTATGTTCAAGCAACTTGAGAGTGTAAGGTACTTGCTCTCAATATCCAAAATAAAAGAAGAAGCAAATATTCGGAACAAGATGGGTTACACTGCTTTGGACATGGTAGAGCATGTTCCAAAAGACATGAGAAGTCTTCAAATAAAACTCATGCTGATGGATGCTGGATTCAAGAACAATGAAAATAACCAAGTTCATCATCCACCATCTGCATCAGTCATAGATGTTCCTCCATCAAGGACAATGAATCCAAGTGAAAAGTTTTGGAGTTTGAAGCGTGTGAACAAGGTCTTACAACATAAGAGTGGTAGGTTGGAAGAAATGAGAGGCATGTTGAGTTTGGTGTCTACAATGATCTCAACCGTGACCTTTGGTGTTGTGATCAATCCACCAAGTGGTGATGTACCTACGTGGTCAGCTATGCATATAGAATATAGAGAAATGCTCACAAGTTTCTTAACGATGAACACAATCTCTTTCATTGCATCACTTGGTGTCACTCTCTTACTTATAAGTGGAGTTCCCTTAAAGAATGAAGTCACAATGGGAATGTTATCAGTAGGCACATGTGTCTGTCTCACATTTCTTGTGCTTACTTACATACATGCTGTACCTTTGAACAAAAATATGTATTTTGGGGACACATTTTCTGTGTTGTTTTCTTGGCTTGGACTTGTTGGGACAATAGTTGTGTTTACCATAATTCGTGTAATTTCTAAGCTAATGAAAGTTCTGTAG 1317 0.3971 MSNVQENDTLNTLYEVSLRGSVSELETLIGRDPLILHRISLTTFTETPLHISALLGHLDFTKSLLTLKPQLALETDHCKRTPLHLASAEGHVEIVHALLQTCEDACLMTDQDGRIPLHYAAMRGRTEVARQLIRGAKSESVMVFDGSGKTMFHLCVEHNHLETLKTLVEVGNVREDFLNCGDFHHGNTILHLAVMFKQLESVRYLLSISKIKEEANIRNKMGYTALDMVEHVPKDMRSLQIKLMLMDAGFKNNENNQVHHPPSASVIDVPPSRTMNPSEKFWSLKRVNKVLQHKSGRLEEMRGMLSLVSTMISTVTFGVVINPPSGDVPTWSAMHIEYREMLTSFLTMNTISFIASLGVTLLLISGVPLKNEVTMGMLSVGTCVCLTFLVLTYIHAVPLNKNMYFGDTFSVLFSWLGLVGTIVVFTIIRVISKLMKVL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00126 438 Pfam Domain of unknown function 297 396 IPR026961 -
Vimu5g00126 438 Pfam Ankyrin repeats (3 copies) 37 100 IPR002110 GO:0005515
Vimu5g00126 438 Pfam Ankyrin repeats (3 copies) 112 171 IPR002110 GO:0005515
Vimu5g00126 438 ProSiteProfiles Ankyrin repeat region circular profile. 185 207 - -
Vimu5g00126 438 ProSiteProfiles Ankyrin repeat profile. 185 207 IPR002110 GO:0005515
Vimu5g00126 438 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 11 432 - -
Vimu5g00126 438 ProSiteProfiles Ankyrin repeat profile. 112 134 IPR002110 GO:0005515
Vimu5g00126 438 Pfam Ankyrin repeat 185 206 IPR002110 GO:0005515
Vimu5g00126 438 ProSiteProfiles Ankyrin repeat region circular profile. 78 100 - -
Vimu5g00126 438 SMART ANK_2a 112 143 IPR002110 GO:0005515
Vimu5g00126 438 SMART ANK_2a 147 176 IPR002110 GO:0005515
Vimu5g00126 438 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vimu5g00126 438 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vimu5g00126 438 SMART ANK_2a 185 214 IPR002110 GO:0005515
Vimu5g00126 438 Gene3D - 7 241 IPR036770 -
Vimu5g00126 438 SUPERFAMILY Ankyrin repeat 13 230 IPR036770 -
Vimu5g00126 438 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vimu5g00126 438 ProSiteProfiles Ankyrin repeat region circular profile. 112 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00126 Vimu-Chr5 1028437 1030563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00126 20 326 Miscellaneous Gene Families AT4G10720 26.899 3.66e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00126 - - gmx:100796407 488.034