Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00107 ATGGGGAGTCTATTGTTGATAAGGGTAGTTTCAGTGACATTTTGTATGACATTAGCATCATCACTGGCAGCAAGGCTTGGTTCCATTCCCATGGCTGCATTTCAGCCAGGCCTTCAGATCTGGTTGGCATCATCCCTTCTTGCTGATGGTTTAGCAGTTGCAGTTCAGACAATTCTTGCTTGTTCCTTTGCTGAAAAAGACTACCAGAAGGCTACTGCTGCTGCAACAAGGACCCTACAAATGACTTTTGTTTTGGGATTTGGACTCTCTCTTGCAGTTGCTCTTGGATTATTCTTTGGAGCTCCAATCTTTTCCAAAAATGCAACTGTGGTGCAATTAATCAAAATAAGCATGCCGGTTTTGGTGTCATTAGTGAGTATTCCTATAGAAATCTTTCTCTTCAGAAGCAAACAATTTATTGGAATATGGATTGCATTAAGTATATACATGATTCTTCGTATGTTAGTTGGTATATGGAGGTAA 483 0.4017 MGSLLLIRVVSVTFCMTLASSLAARLGSIPMAAFQPGLQIWLASSLLADGLAVAVQTILACSFAEKDYQKATAAATRTLQMTFVLGFGLSLAVALGLFFGAPIFSKNATVVQLIKISMPVLVSLVSIPIEIFLFRSKQFIGIWIALSIYMILRMLVGIWR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00107 160 Pfam MatE 7 157 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g00107 160 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 118 160 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00107 Vimu-Chr5 848350 850261 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00107 K26938 - gmx:100793398 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02100 4 23315422 23319877 Vimu5g00107 5 848350 850261 ECH
Vimu5g00107 5 848350 850261 Vimu5g00107 5 848350 850261 ECH
Vimu5g00107 5 848350 850261 Vimu4g02100 4 23315422 23319877 PCT