Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00103 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAGAATGAAAGACATTATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTGATAAGGTACATGCTCACAAATGGACAAGGCTGTTGGAGTGACATTGCAAGGAATGCAGGTCTCCAACGATGTGGCAAAAGTTGTCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAACGTGGTGCATTCTCATCCCAGGAACAACACCTCATCTTTCATTTGCATTCCATTTTTGGTAACAGCTCTGACTCATCAGAGTCTAAAGATGTTCTGAGTGGGATCATGCCCTTTAATGAACATGACATCATCATGAACATGAGCATGGATTCCTCTTCATCCATATCATCCATGCAAGCAATGGTTTTGCCTGACCAATTTGACCCTTTTTCCTTGTTGGTAAACAATCACTGTGATATGACTAATGTTTCAGAAATTTTTACCTGCATGGAAGATGGACACCAAGTGAATCATGGGACATTGGAAGAAAGTAACAAAATGGAGTTAGCAAGAGACTTCTCCCTTCCTTCGTTAGAAAGTAGAAGCATTGAAAGTGACAGTGTTCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAATAACACTAATAAGATTCAAGACTCCAAGGTAGAGGACTTAATTGGGTTTTCAAATCATGGCCAAGGGGAATTTTATTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 786 0.3969 MRKPDLMANKDRMKDIIKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSSQEQHLIFHLHSIFGNSSDSSESKDVLSGIMPFNEHDIIMNMSMDSSSSISSMQAMVLPDQFDPFSLLVNNHCDMTNVSEIFTCMEDGHQVNHGTLEESNKMELARDFSLPSLESRSIESDSVPIDVKSHNNHFNYGSFNNTNKIQDSKVEDLIGFSNHGQGEFYLENLMQDITSFPFLDF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00103 261 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Vimu5g00103 261 CDD SANT 26 70 IPR001005 -
Vimu5g00103 261 PANTHER MYB DOMAIN PROTEIN 55 18 96 - -
Vimu5g00103 261 SMART sant 22 72 IPR001005 -
Vimu5g00103 261 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Vimu5g00103 261 SUPERFAMILY Homeodomain-like 25 96 IPR009057 -
Vimu5g00103 261 FunFam MYB transcription factor 20 76 - -
Vimu5g00103 261 Gene3D - 20 76 - -
Vimu5g00103 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00103 Vimu-Chr5 824540 825630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00103 1 96 MYB Transcription Factor Family AT3G08500 76.699 2.55e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu5g00103 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00103 K09422 - gmx:100784755 377.481