Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00101 ATGAATGACGGTAGGCAAATGGGGTTGCATTATGTAGACGCAGGGTTTCCTTATGCTGTGAATGAAAACTTTGTGGATTTCTTTCAAGGATTCTCTCATGTGCCCGTCAATTATGCCTTTGCTGGTTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGTAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCCAGAATGGAGATTGACAGGACTGAGTGGGAATACTCTTCGACAATTACTGCTGTGGAACCGGCTACAACAGATTCTCCGCCTAGAAGAGATGGAGTCTCTAGCATGCAGACCATCCCCGAAGAATGCAGTCCAAATCATCTTGAGTCCAATAGTAGTAGCCAGGTCATATGGCAAGACAACATCGATCCTGATAATATGACTTATGAGGAACTACTGGATTTGGGAGAGGCAGTTGGGACTCAGAGCCGTGGTCTTTCACAAGAACTTATTGATATGCTTCCAACCTCGAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTACCATGCAGCCATGTGTATCATAGTGAATGCATCACCAAGTGGCTCAGCATTAACAAGAAATGTCCTGTCTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAG 741 0.4278 MNDGRQMGLHYVDAGFPYAVNENFVDFFQGFSHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRTEWEYSSTITAVEPATTDSPPRRDGVSSMQTIPEECSPNHLESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHSECITKWLSINKKCPVCNTEVFGEESTH 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00101 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vimu5g00101 246 SUPERFAMILY RING/U-box 194 240 - -
Vimu5g00101 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Vimu5g00101 246 SMART ring_2 195 235 IPR001841 -
Vimu5g00101 246 Pfam Ring finger domain 194 236 IPR001841 -
Vimu5g00101 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vimu5g00101 246 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00101 Vimu-Chr5 785701 792059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00101 10 246 C3H Transcription Factor Family AT3G63530 56.303 1.79e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00101 K19045 - gmx:100792734 486.493