Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00096 ATGACAGATCCTAAGTCCAACATGTTCAATGAATGGTTCAACTTCATGCTCTTCCAACCTCACTACTCTTCCTCTTCCTCTTCTCAACCCTACCACCCTCTTGCAAATTACTCAAACAACAGGTTTGGAATTCAATTGCAAGGACCCTCATCTTCATCTTTATCTTCATCTGCATCTTCATCTTCATCTTCATATTCATATGCATATGCATATGCAGCAGCAGCAGCTCCTCCTCCTCCTCCATCTTCCCCTCCTCTAAGAGAGGCACTTCCTCTCATCAACAAGATAAGCCTGACAGGTGAGCAGGTCCAACAAAATGAACCCTCAAATGTTGTTGTGGAAGAGAGAGAAGAGGAGAAGGTGGAGAACAATGGTGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTGTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAGCACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAGCCAACAGCTATGCTGAGGCTTCCATGCTTTTGTTGTGCAGCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACACTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAGTGCAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGCGGCAAAATATGGTATTGCTTATGTGGGTCTGATTTCAAACACAAAAGGTCTCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCTGCTTCTGAGATTGAACATGATGGAGAACATTCAATATGA 1083 0.4367 MTDPKSNMFNEWFNFMLFQPHYSSSSSSQPYHPLANYSNNRFGIQLQGPSSSSLSSSASSSSSSYSYAYAYAAAAAPPPPPSSPPLREALPLINKISLTGEQVQQNEPSNVVVEEREEEKVENNGEDGDEETVTVALHIGLPRMDTCSDLGSSRVSSTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAAGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGEHSI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00096 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 226 IPR013087 -
Vimu5g00096 360 Pfam C2H2-type zinc finger 199 218 - -
Vimu5g00096 360 SUPERFAMILY beta-beta-alpha zinc fingers 267 303 IPR036236 -
Vimu5g00096 360 ProSitePatterns Zinc finger C2H2 type domain signature. 201 221 IPR013087 -
Vimu5g00096 360 MobiDBLite consensus disorder prediction 103 129 - -
Vimu5g00096 360 FunFam Zinc finger protein WIP2 252 334 - -
Vimu5g00096 360 FunFam zinc finger protein WIP2-like 198 221 - -
Vimu5g00096 360 PANTHER ZINC FINGER PROTEIN WIP2 49 355 IPR043584 GO:0003700|GO:0010468
Vimu5g00096 360 Gene3D Classic Zinc Finger 252 333 - -
Vimu5g00096 360 Gene3D Classic Zinc Finger 198 221 - -
Vimu5g00096 360 SMART c2h2final6 283 303 IPR013087 -
Vimu5g00096 360 SMART c2h2final6 199 221 IPR013087 -
Vimu5g00096 360 SUPERFAMILY beta-beta-alpha zinc fingers 195 221 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00096 Vimu-Chr5 727682 730097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00096 1 358 C2H2 Transcription Factor Family AT3G57670 52.882 2.89e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g00096 zf-C2H2_6 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00096 - - gmx:100794446 558.14