Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00092 ATGACGGACCTTCATCAATTCAATAACATCACTCTCGGAGGCCGTGGAGGCACTGTAATCCCTCTAACCTGCGTTCTACTCCTCTCCGTGTATGTATGCGGTTGGATCAGACTGAATCTGCATGGCCTCTACTCTGTTGCACTGCATGTTCCGTATCAAGTTGTTACAATTTTTGGGATGTATGACACTTCTTCTCATGTTATGGGGTTGCAGAATCCAGGACAGATGAAATTATACTCTGGTGGAATAGTATGGAAGAGACAGGGCGGTGGTAAATTAATTGAAGTTGATAAATCTGATATAGAGGGGGTAACATGGATGAAGGTTCCAAAGACTAACCAACTCGGTGTTCAAATTAAAGATGGGTTGTACTACAAGTTTACTGGATTTCGTGATCAGAGCACTTGTGGAATAACAGTGCGTGAGAAGCAGCTTTCTGTTAGCGGACGAAATTGGGGAGAAGTTGATCTGAATGGAAATATGTTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCGCTAGCAGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCACTTATGGAGATAAGTTTCCATATACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAAAAACTCCTCCTGCTGAAGTTTTCCGCAGCAGAATAATGTCTATGGCTGATGTTGGCGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGAGTATTGCGATCCTTACACCAAGAGGACGATACATTGTTGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGACCCCCCTATTCGGAAGGGACAAACTTTGTATCCTCATATTGTGATGCAGTTTGAATCCGATTATGTTGTCCAAAGTGAATTGGCGATGAACGAAGATCTTTATAACACAAAGTACAAGGACAAGTTAGAGCTGTCTTACAAGGGGCTTATTCATGAAGTGTTCACTACAATATTACGTGGCTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAGGATGGTTATGCTGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCTACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCCGGTGGTTCCAATATGCATTACTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAACATCTCTTCCGTAATATCCAGAGAAATGAGTACCATAATTTGTATGAATTTATTAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGGCCAGCCTACTGCTGGTATAAAGAAGGTTCTGGAGAATGACGACGATGATGCTGTTGATCCACATCTTGAGCGAATAAAAAATGCAGCTGGTGACGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGGAGACGATTCTGATGCCAGTAAAAGTGGCGGGGAGAAAGAGGCACGTGGTTTTCTTTTTTGCCTTTGTTACCTTTTTTGTAGTACTTCTCAACTCTTAATCTATGGTGTGTCTGATACCTTAATGATGGAAAATTTTCAGAAGCCTGCCAAGAAGGAAATAAAGAAGGACCTGCCTTCTAAGGCATCTACTTCTAAAAAGAAACCAAAAGATGATGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAAAAAGACCCAAATGCACCCAAGAGGGCCATGTCCGGTTTCATGTTCTTTTCTAAATTAGAAAGAGAGAATCTCAAGAAAACAAACCCTGGAATCTCATTTACGGATGTGGGAAGAGTACTCGGAGAGAAATGGAAAAAAATGTCAGCGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAACAACGTTACAAGGATGAAATTAGCGACTACAAGAATACCCAACCCATGAATATTGATTCGGCAAATGCAACTGACAGTGCCTAA 2151 0.4096 MTDLHQFNNITLGGRGGTVIPLTCVLLLSVYVCGWIRLNLHGLYSVALHVPYQVVTIFGMYDTSSHVMGLQNPGQMKLYSGGIVWKRQGGGKLIEVDKSDIEGVTWMKVPKTNQLGVQIKDGLYYKFTGFRDQSTCGITVREKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSSNTQFVGDEKTPPAEVFRSRIMSMADVGAGGEDAVVTFESIAILTPRGRYIVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFESDYVVQSELAMNEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDGQPTAGIKKVLENDDDDAVDPHLERIKNAAGDDESDEEDSDFVADKDDEGSPTDDSGGDDSDASKSGGEKEARGFLFCLCYLFCSTSQLLIYGVSDTLMMENFQKPAKKEIKKDLPSKASTSKKKPKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKAREDKQRYKDEISDYKNTQPMNIDSANATDSA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00092 716 SUPERFAMILY PH domain-like 249 483 - -
Vimu5g00092 716 CDD PH1_SSRP1-like 250 383 - -
Vimu5g00092 716 Pfam POB3-like N-terminal PH domain 71 133 IPR035417 -
Vimu5g00092 716 FunFam FACT complex subunit SSRP1 382 490 - -
Vimu5g00092 716 SUPERFAMILY HMG-box 619 702 IPR036910 -
Vimu5g00092 716 Gene3D - 382 490 IPR011993 -
Vimu5g00092 716 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 632 700 IPR009071 -
Vimu5g00092 716 MobiDBLite consensus disorder prediction 699 716 - -
Vimu5g00092 716 MobiDBLite consensus disorder prediction 673 698 - -
Vimu5g00092 716 Pfam Structure-specific recognition protein (SSRP1) 149 217 IPR024954 -
Vimu5g00092 716 SMART Rtt106_2 391 484 IPR013719 -
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 262 278 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 399 417 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 417 434 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 459 477 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 284 300 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 307 323 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 443 459 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 PRINTS Structure-specific recognition protein signature 372 385 IPR000969 GO:0003677|GO:0005634
Vimu5g00092 716 MobiDBLite consensus disorder prediction 512 552 - -
Vimu5g00092 716 Gene3D High mobility group box domain 615 711 IPR036910 -
Vimu5g00092 716 Gene3D - 242 381 - -
Vimu5g00092 716 MobiDBLite consensus disorder prediction 673 716 - -
Vimu5g00092 716 CDD HMG-box_AtSSRP1 629 703 - -
Vimu5g00092 716 FunFam FACT complex subunit SSRP1 616 709 - -
Vimu5g00092 716 Coils Coil 682 702 - -
Vimu5g00092 716 Pfam Histone chaperone Rttp106-like 393 482 IPR013719 -
Vimu5g00092 716 Gene3D - 64 140 IPR011993 -
Vimu5g00092 716 CDD PH2_SSRP1-like 385 484 - -
Vimu5g00092 716 FunFam FACT complex subunit SSRP1 139 222 - -
Vimu5g00092 716 MobiDBLite consensus disorder prediction 594 623 - -
Vimu5g00092 716 PANTHER FACT COMPLEX SUBUNIT SSRP1 65 685 - -
Vimu5g00092 716 Gene3D - 141 222 IPR038167 -
Vimu5g00092 716 Pfam HMG (high mobility group) box 632 700 IPR009071 -
Vimu5g00092 716 SMART hmgende2 631 701 IPR009071 -
Vimu5g00092 716 MobiDBLite consensus disorder prediction 594 638 - -
Vimu5g00092 716 FunFam Fact complex subunit ssrp1 242 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00092 Vimu-Chr5 694388 700550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00092 628 700 ARID Transcription Factor Family AT1G04880 42.466 2.93e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vimu5g00092 Rtt106 4e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00092 K09272 - gmx:100805034 1059.28