Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00088 ATGTTTCGTCAAAGGGAAGATTATGAAGAAAAAAGAGATGAGAAAAAGACAAAACATTATCATGGACCACTTTATGTCATCGTGATTTATGATCCAAAAGCTACTACTCCTGTTATGGTAGGAACAGAATTCAAGAAAGATTGTAACAGGAAACAATGTTTCTCATTCTGCAGTATCGGAGACCAAGGTAACTGTGGAGATAAGATGAGCATTGTGTATACCCATGCTGTGAAGTATTCCCAAGAAGTGACAAGGATGAACACAGAGATGGATTCAAATATCGGTCAACATTGTCACCAACAAAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAATATTGTGAACAATAACAGCAACAACATCAACAACAACAACATTGGTTGTGTCAATGATGAAACTTTCAGAAGTGACCATAATAACCATCATCATCAGCAGCAGCAGCATAGCTATCACCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCGATGATTCTGAGCCTTTGCAAGAGTTTGGAGGGAAGCCAGTGAAGGAAGAAGCAGGGGACAGTGGTTACTCTTTCGGATCTTCACCTCAGATAATGTACCAAACTCAGCAAGTTCAAGGCTTTTCTATGCCAAATGGTTCTTTAAGGCCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCTCCTGCAGGGTTTTTCTCCAACTACTCAGTTGATAACACAATGAGAGAGGTGGGAAGTTTTAGGAGCTGTGATGTATCAAATGGGCAAGCTATTGCATCCGGTAGTGGGTTGCATGGTACTTTGAACTTCTCATCAAGGCCATCATCCTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGTTGTGGAAGTTGAAAGCAGAAACCTGAGGAATGACTGTGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGTTCTGCAATCAGTGCCTCCAGAACAGCTACTAACACCTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGAATGCAGATTTTGGATATCAGAAACTTGGTCTGACACATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGGCTACCATTGAGAAGTTATATCAAACTCAAGGAACTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCTGTTGAGTACATCAAAGACCTGCAGAAACAAGTTAAGATGCTGGCTGACACTAGGGCAAAGTGCACTTGTACAAGTAACAAGAAGCAATAA 1512 0.416 MFRQREDYEEKRDEKKTKHYHGPLYVIVIYDPKATTPVMVGTEFKKDCNRKQCFSFCSIGDQGNCGDKMSIVYTHAVKYSQEVTRMNTEMDSNIGQHCHQQNSGLMRYRSAPSSLLTNIVNNNSNNINNNNIGCVNDETFRSDHNNHHHQQQQHSYHPSTSSEMETMLAKLISSDDSEPLQEFGGKPVKEEAGDSGYSFGSSPQIMYQTQQVQGFSMPNGSLRPAGNGFDGSFSAVNSMASQNSTQTKMVASTNCSNLIRQKSSPAGFFSNYSVDNTMREVGSFRSCDVSNGQAIASGSGLHGTLNFSSRPSSSCSTRMPQIAENGNEVVEVESRNLRNDCGNTKCYMPSFTSDFWDGSAISASRTATNTCEISFSTSNAMDIQNADFGYQKLGLTHHLSLPSSSTRMATIEKLYQTQGTVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLADTRAKCTCTSNKKQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00088 503 FunFam Transcription factor bHLH130 family 432 501 - -
Vimu5g00088 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 431 481 IPR011598 GO:0046983
Vimu5g00088 503 SMART finulus 437 487 IPR011598 GO:0046983
Vimu5g00088 503 Pfam Helix-loop-helix DNA-binding domain 437 482 IPR011598 GO:0046983
Vimu5g00088 503 MobiDBLite consensus disorder prediction 139 162 - -
Vimu5g00088 503 Gene3D - 433 502 IPR036638 GO:0046983
Vimu5g00088 503 MobiDBLite consensus disorder prediction 177 196 - -
Vimu5g00088 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 492 IPR036638 GO:0046983
Vimu5g00088 503 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 112 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00088 Vimu-Chr5 659344 662666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00088 253 499 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.976 2.78e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g00088 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00088 - - gmx:100795896 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01465 4 15367217 15369438 Vimu5g00088 5 659344 662666 ECH
Vimu5g00088 5 659344 662666 Vimu5g00088 5 659344 662666 ECH