Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00087 ATGGCTCAGTGGCAGGGTGATTCTGATGAGGGCATAGACTACATGTTCAAGATTGTGATGGTTGGTGACTCTGGGGTTGGAAAGTCTCAGCTTTTGAATCGGTTTGTGAAGAACGAATTCCATATGAAATCGAAACCCACAATTGGGGTGGAGTTTCTGACAAGGACACTCGTCATGGACCACAAGCTTGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTACCAGGCAATTACAACAGCCTATTACAGGGGTGCAATTGGTGCATTACTAGCATACGACATAACCAAGCAGCAAACCTTTGATCATGTTGAGAAGTGGTTGGATGAGCTGCGGATACACGCGGATCGTAATATACTTGTCATGCTTGTTGGCAACAAATCTGACCTGAGTTCAATTCGAGCAGTGCCTGTTGAAGTGGCTAGAGAGTTCGCACAGCAAGAGGGTCTATTCTTTCTGGAGACATCTGCACTTGACTCCAGCAATGTGGAATCAGCTTTCGTTGGTCTCCTCTCTCAAGTATATAGAACAGTCAGTAGGAAGCAAATCATTGTGGATGGACATGAAGCAAATTGGGACAAAGTAAACCTTGGACTTGAAGGAACAAACATTAAGATGCCATTTCAAGAACCTGAATGCCACAATGCTAAAAAGAGATCCAATTGCTGCAGTATTCTTTAG 687 0.444 MAQWQGDSDEGIDYMFKIVMVGDSGVGKSQLLNRFVKNEFHMKSKPTIGVEFLTRTLVMDHKLVKAQIWDTAGQERYQAITTAYYRGAIGALLAYDITKQQTFDHVEKWLDELRIHADRNILVMLVGNKSDLSSIRAVPVEVAREFAQQEGLFFLETSALDSSNVESAFVGLLSQVYRTVSRKQIIVDGHEANWDKVNLGLEGTNIKMPFQEPECHNAKKRSNCCSIL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00087 228 SMART ras_sub_4 16 179 - -
Vimu5g00087 228 SMART rho_sub_3 18 174 IPR001806 GO:0003924|GO:0005525
Vimu5g00087 228 FunFam ras-related protein RABA5a 8 225 - -
Vimu5g00087 228 PANTHER DRAB11-RELATED 10 190 - -
Vimu5g00087 228 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Vimu5g00087 228 ProSiteProfiles small GTPase Ras family profile. 10 228 IPR001806 GO:0003924|GO:0005525
Vimu5g00087 228 CDD Rab11_like 13 177 - -
Vimu5g00087 228 SMART ran_sub_2 21 222 - -
Vimu5g00087 228 Gene3D - 9 225 IPR027417 -
Vimu5g00087 228 SMART rab_sub_5 16 179 - -
Vimu5g00087 228 NCBIfam small GTP-binding protein domain 14 169 IPR005225 GO:0005525
Vimu5g00087 228 PRINTS Transforming protein P21 ras signature 154 176 - -
Vimu5g00087 228 PRINTS Transforming protein P21 ras signature 16 37 - -
Vimu5g00087 228 PRINTS Transforming protein P21 ras signature 119 132 - -
Vimu5g00087 228 PRINTS Transforming protein P21 ras signature 57 79 - -
Vimu5g00087 228 PRINTS Transforming protein P21 ras signature 39 55 - -
Vimu5g00087 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 185 IPR027417 -
Vimu5g00087 228 ProSiteProfiles small GTPase Rab1 family profile. 11 225 - -
Vimu5g00087 228 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00087 Vimu-Chr5 654386 655877 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00087 K07904 - gmx:100789008 426.787