Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00082 ATGGCGTCACCGTCGTTAATCGCCTTGCTCGTCGATCTTTCCGTGGTGCCAACCATTCTGTACGCATCTTTTCGACTTCTTTTTCAGGGTGCTTCAATGAAATATGGTTTCCCAATTGTTTATCAATCAGTGTTCCAAAGGGGTTATAGGACACTGAACTCTGGGCTTTTCCATCCATCGAGAGTTACTGGTAGTTTTACGTCTAATGTTGGAGGTGGCTTTAATTTGAGGAAATGGTTACTATTGGGGGCTGCAAATAAATATTGGGAGGCATCTAGATTAATTCATGGCTCAGGCACGAGCATCATCACCTTTCTTAAGGTGTGCAAGAGCAGTGAACAGCTGAAGCAAGTGCACGCTTCCATCATCTACCGAGGCCTTGAGCAAAACCACTTCCTCATCTCCCTTTTCATTCCCCTCTCACACACCCTCTCTACTCTCTCCTACACCTCATCTGTCTTCCTCCGTGTATTCACCCCTTCAACCTTCCTTTGGAACACTCTCATCAAATCCCATTGCCACAATAGCTGCTTCTCCCAAACCCTCACTGCCTTCGCTCGCATGAAGGCGCACGGGGTCCTTCCCGACAACTTCACCTACCCTTCTGTCATTAAGGCCTGTTGCGCCGCATGTATGCCGCGGGAAGGAAAATCACTTCATGGGTCTGCGTTCAGGTGTGGAGTCCATCGGGATCTCTACGTGGCCACTAGTTTAGTCGATATGTATGGCAAATTTGGGCAGATTGCTGATGCTCGCAGGGTTTTTGATGGAATATCTAAGAGGAGTGTTGTTTCTTGGACTGCTATGCTTGTTGGGTATGTTTCCGTTGGGGATGTTGTGGAGGCCAAGAAGCTGTTTAATGAGATGCCGCAGAGAAATGTGGCTTCTTGGAATGCGATGTTGCAAAGTTTTATCAAGTTGAGGAATTTGAGTGGTGCTAGGGACGTGTTTGAGGCTATGCCGGAGAAGAATGTTGTTTCTTTCACCATCATGATTGATGGGTATGCTAAGGTGGGTGACATGGTGGCCGCGAGGTTCTTGTTTGATCGTGCTCCCAAAAAGGATGTTGTTGCTTGGTCTGCTTTGATATCGGGTTATGTCCAGAATGGGCAGCCTAATCAGGTGTTGAAAGTGTTTTTTGAGATGGAATCGATGAATGTGAAGCCTGATGAGTTCATACTGGTTAGCTTGATGTCGGCTTCAGCGCAATTGGGACACTTAGAACTCGCTCAATGGGTTGATTCTTATGTAAACAAGAGTTGTATTGATGTTCAACAGGACCATGTAATTGCAGCGCTTCTGGATATGAATGCAAAATGTGGAAACATGGATAGAGCTTTGAAATTGTTTGAGGAAAGACCTAAACGAGATCTAGTCTTGTATTGTTCGATGATACAAGGGTTGTCAATTCATGGGCGTGGGGAACAAGCCGTGAATCTGTTTAACAGGCTGCTGATGGAAGGGTTGTATCCAGATGAGGTGGCCTTCATTGTCATTCTCACAGCCTGTAGTCATGCTGGGCTTGTTGATGAGGGCTGGAACTACTTCCAATCCATGAAGCAAAAATACTACATTAGTCCTTCGTCTGATCACTACGCGTGTATGGTTGATCTTCTAAGCCGGTCAGGACACATAAGGGATGCTTATGAACTTTTAAAATTAATGCCTAAGCCTCATGCCGGTGCCTGGAGTGCACTTCTTGGGGCATGTAAACTATATGGTGATTCAGAGCTGGGAGAGATTGTTGCCAATCGACTTTTGCAGTTTGATAATCTAAATGCAGCTAGCTATGTGCTGGTGTCTGACTTCTATGCGGCAAAAGGGCAATGGATTTATGTTTCCCTTGTGAGAAGTAAGATGAGGGAAAGGAGAGTACATAAGATACCTGCCGATCTGAATTCATTTTCAGCTGATCTGGAAGCTTTAGCTGTTGCCCCATATACTGCTTTCTCTCATCGGCAAGAGAGGAATCTCTCTACCCCAAATACCGACTCCACCGATTCACCGGATGATCCCCACATTCTTACAAAGGAAAAATATGTGACCAACCCCGCCCCCCTTTTAAAGAGTTACCCATTCCTCAAATACCCCTCCTTTACTAACCAAACTCATACAGAAAACTTGGCTACAACAATGTTGCTTACTCCACCTGAAAGAATGGTTTTTATCAAAAACACAATTGAAATAGAAAAAGAGAAATGCGAAGAGAGTTCCATGGTTTCTTCCCCAAGATGCACTAGGAGGCTCGATTCATGGACTAGAGAGATTGAAGCTACAAAAGGGGCTGATTTAGGGGCGCGAACAAAACCCTTTGTTAAAGCTGGTGCGAAGTCACTCGAAGAGGAGTGCGAAGCATGTTTGAGGCCGTTGAAAGCTCACCGTCGTCGATGGTTCGCCGCCGTCGTTGAAGGTTTGCCGCTGTCGAAAGCTTTGCCACACTCTGCCGAAACCTCCAAGTTCCATTGCTTTCAGGATAAGATGGATATCTTAGCTCCCCACAAGGACCCATCCCCACTTGAATTTCCTGCAAATGAATTTAGTCTCAGTGAATTCTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAATTGCTGCTGAACTGGCAACTCATTTTGTCCTTTCTGAGTTTGGTTTGTTCATTGTAATCATCCTGGTTGATGTATGTTTAATTGACATTAATAGATCTCGTGAAATTTCTGGTCAAGCAGAATCACCGACAACACTTGATAAAGTATTGGACTTGGGCATTGTTGATATGTCATGGATGATCATCTTACTGAAAGTGGGTTCCAGTGATATGGGAAACTCTTTTATTATTAGATTGTGTGGCTATTTTCACTTATTGAAAGTTGGTATTGTGAGTGATCTTGATAAGTTATGTACTATGTTAGCTGTGATCTTTCTGCCTATCCATGGGTATTGCACCTTGGTGAGTGTTTTCATGGAGTTTCTCGCTTTCATTACCCAAATGGTTCGCTCTCATGGCGTCACTCTCGTTAATCGCCTTGCTCGTCGATCTTTCCGTGGTGCCAACCATTCTGTTTATCAATCAGTGTTCCAAAGGGGTTATAGGACACTGAACTCTGGGCTTTTCCATCCATCGAGAGTTACTGGTAGTTTTACGTCTAATGTTGGAGGTGGCTTTAATTTGAAGAAATGGTTACTATTGGGCGATGCAAATAAATATTGGGAGGCATCTAGATTAATTCATGGCTCAGCATTTTTGGCAAGAGACTATTATGATATTCTGGGTGTGAGTAAGAATGCGAGTTCTTCCGAAATAAAGAAAGCTTACTATGGGATTAAAAGAAGAGACTTGGATTGCGGAGAATCAATTTGCATTCTTGTTAAGAATATCTACAACCAAAGATATTTATCTTCTGAGGAGGCTGATGGAAAGGTGTCAAAATTTTGGAAAAGAAAGGTGTCCATGTTCCTTATATCTGATCTAGGCTATAGAAGACTCTATAATGGGGTAATTACTAGTGCAAGACTTGCAAAAAGGCTCCATCCAGATACAAACAAAGATGATCCCGAAGCTGAAAAGAAGTTTCAAGAAGTCTCGATAGCATATGAGGTTTTGAAGGACGAGGAAAGGCGACAACAATATGATCAGCTTGGTCATGATGCTTATGTAAACCAACAAAGCACTGGTTTCGGTGGTGAGGGTGGCTTCAATCCCTTCGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTCTTCCATCAGAATATTGGTGGAGAGGATGTGAAGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTGTTATTTGTACAAGTTGGCATATTCAGAATGGAGAGTACCTGTGGTACCTGCAAGGGAACTGGAAAAATTGTATCGGGGTGAGAAGGTTGTCAAAGGAACAAAGTCGGTCAAGTTGGATATTATGCCTGGGATAGACACCAATGAGACCATAAAGGTTTTCGGAGGTGGTGGAGCAGATCCTGATAGAGATCATCTTGGTGATCTCTATGTTACTATCAAGGTTAGAGAAGACCCTGTTTTTCGCAGAGAAGGATCTAATATTCACGTAGATGCTGTGTTAAGTATCACTCAGATAGCAGTGGTAGTGGTGGTGGTGGTGTGGATATGGTTGGTGATGGAAGTTTATTGTCAATATTTGGATTTCCAAGATCTTGCGATTTTGGGGGGAACTATTCAAGTCCCGACTCTTACTGGAGAAGTTGTACTTAAGGTTCGTCCAGGGACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGCATATAAACGTCTGTATTTGAAATGCTATTACAGAAACCTGACACAGAGACAACGAGAGTTGATTGAAGAGTTTGCCAAGGAAGAGCAAGAGGACTTCTGGTTGAAAATATTTGCAGAATCTCCACTATTTGTTTATGGGAAAGTCATGCTCAACTGGGTGGGAACCCACCTGCTATTAGAAATTTTGTAG 4497 0.4358 MASPSLIALLVDLSVVPTILYASFRLLFQGASMKYGFPIVYQSVFQRGYRTLNSGLFHPSRVTGSFTSNVGGGFNLRKWLLLGAANKYWEASRLIHGSGTSIITFLKVCKSSEQLKQVHASIIYRGLEQNHFLISLFIPLSHTLSTLSYTSSVFLRVFTPSTFLWNTLIKSHCHNSCFSQTLTAFARMKAHGVLPDNFTYPSVIKACCAACMPREGKSLHGSAFRCGVHRDLYVATSLVDMYGKFGQIADARRVFDGISKRSVVSWTAMLVGYVSVGDVVEAKKLFNEMPQRNVASWNAMLQSFIKLRNLSGARDVFEAMPEKNVVSFTIMIDGYAKVGDMVAARFLFDRAPKKDVVAWSALISGYVQNGQPNQVLKVFFEMESMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVNKSCIDVQQDHVIAALLDMNAKCGNMDRALKLFEERPKRDLVLYCSMIQGLSIHGRGEQAVNLFNRLLMEGLYPDEVAFIVILTACSHAGLVDEGWNYFQSMKQKYYISPSSDHYACMVDLLSRSGHIRDAYELLKLMPKPHAGAWSALLGACKLYGDSELGEIVANRLLQFDNLNAASYVLVSDFYAAKGQWIYVSLVRSKMRERRVHKIPADLNSFSADLEALAVAPYTAFSHRQERNLSTPNTDSTDSPDDPHILTKEKYVTNPAPLLKSYPFLKYPSFTNQTHTENLATTMLLTPPERMVFIKNTIEIEKEKCEESSMVSSPRCTRRLDSWTREIEATKGADLGARTKPFVKAGAKSLEEECEACLRPLKAHRRRWFAAVVEGLPLSKALPHSAETSKFHCFQDKMDILAPHKDPSPLEFPANEFSLSEFLALTGGRLSGKEIIAAELATHFVLSEFGLFIVIILVDVCLIDINRSREISGQAESPTTLDKVLDLGIVDMSWMIILLKVGSSDMGNSFIIRLCGYFHLLKVGIVSDLDKLCTMLAVIFLPIHGYCTLVSVFMEFLAFITQMVRSHGVTLVNRLARRSFRGANHSVYQSVFQRGYRTLNSGLFHPSRVTGSFTSNVGGGFNLKKWLLLGDANKYWEASRLIHGSAFLARDYYDILGVSKNASSSEIKKAYYGIKRRDLDCGESICILVKNIYNQRYLSSEEADGKVSKFWKRKVSMFLISDLGYRRLYNGVITSARLAKRLHPDTNKDDPEAEKKFQEVSIAYEVLKDEERRQQYDQLGHDAYVNQQSTGFGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKVGVVFLLVQDLKLVSDVKGQECYLYKLAYSEWRVPVVPARELEKLYRGEKVVKGTKSVKLDIMPGIDTNETIKVFGGGGADPDRDHLGDLYVTIKVREDPVFRREGSNIHVDAVLSITQIAVVVVVVVWIWLVMEVYCQYLDFQDLAILGGTIQVPTLTGEVVLKVRPGTQPGQKVVLKKKAYKRLYLKCYYRNLTQRQRELIEEFAKEEQEDFWLKIFAESPLFVYGKVMLNWVGTHLLLEIL 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00082 1498 Gene3D - 1271 1350 - -
Vimu5g00082 1498 Pfam E motif 573 629 IPR046848 -
Vimu5g00082 1498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vimu5g00082 1498 SUPERFAMILY HSP40/DnaJ peptide-binding domain 1309 1363 IPR008971 GO:0006457|GO:0051082
Vimu5g00082 1498 NCBIfam pentatricopeptide repeat 264 293 IPR002885 -
Vimu5g00082 1498 NCBIfam pentatricopeptide repeat 357 391 IPR002885 -
Vimu5g00082 1498 NCBIfam pentatricopeptide repeat 296 326 IPR002885 -
Vimu5g00082 1498 NCBIfam pentatricopeptide repeat 459 493 IPR002885 -
Vimu5g00082 1498 NCBIfam pentatricopeptide repeat 326 356 IPR002885 -
Vimu5g00082 1498 NCBIfam pentatricopeptide repeat 164 196 IPR002885 -
Vimu5g00082 1498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vimu5g00082 1498 CDD DnaJ_C 1296 1435 - -
Vimu5g00082 1498 SUPERFAMILY HSP40/DnaJ peptide-binding domain 1401 1440 IPR008971 GO:0006457|GO:0051082
Vimu5g00082 1498 Gene3D Tetratricopeptide repeat domain 429 632 IPR011990 GO:0005515
Vimu5g00082 1498 Pfam PPR repeat family 354 392 IPR002885 -
Vimu5g00082 1498 Pfam PPR repeat family 160 208 IPR002885 -
Vimu5g00082 1498 Pfam PPR repeat family 292 337 IPR002885 -
Vimu5g00082 1498 SUPERFAMILY Chaperone J-domain 1166 1245 IPR036869 -
Vimu5g00082 1498 Gene3D DnaJ domain 1074 1221 IPR036869 -
Vimu5g00082 1498 CDD DnaJ 1080 1198 IPR001623 -
Vimu5g00082 1498 PRINTS DnaJ domain signature 1201 1220 IPR001623 -
Vimu5g00082 1498 PRINTS DnaJ domain signature 1181 1201 IPR001623 -
Vimu5g00082 1498 PRINTS DnaJ domain signature 1082 1100 IPR001623 -
Vimu5g00082 1498 Gene3D Tetratricopeptide repeat domain 324 428 IPR011990 GO:0005515
Vimu5g00082 1498 Gene3D Tetratricopeptide repeat domain 230 323 IPR011990 GO:0005515
Vimu5g00082 1498 MobiDBLite consensus disorder prediction 654 669 - -
Vimu5g00082 1498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vimu5g00082 1498 SMART dnaj_3 1155 1201 IPR001623 -
Vimu5g00082 1498 SMART dnaj_3 1079 1132 IPR001623 -
Vimu5g00082 1498 FunFam Pentatricopeptide repeat-containing protein 163 287 - -
Vimu5g00082 1498 Gene3D Tetratricopeptide repeat domain 105 229 IPR011990 GO:0005515
Vimu5g00082 1498 Pfam DnaJ domain 1166 1206 IPR001623 -
Vimu5g00082 1498 MobiDBLite consensus disorder prediction 654 675 - -
Vimu5g00082 1498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 354 IPR002885 -
Vimu5g00082 1498 Pfam DnaJ C terminal domain 1291 1438 IPR002939 -
Vimu5g00082 1498 ProSitePatterns Nt-dnaJ domain signature. 1186 1205 IPR018253 -
Vimu5g00082 1498 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 428 633 - -
Vimu5g00082 1498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vimu5g00082 1498 FunFam Pentatricopeptide repeat-containing protein At5g61800 320 420 - -
Vimu5g00082 1498 Pfam PPR repeat 459 489 IPR002885 -
Vimu5g00082 1498 Pfam PPR repeat 432 452 IPR002885 -
Vimu5g00082 1498 Pfam PPR repeat 495 522 IPR002885 -
Vimu5g00082 1498 Pfam PPR repeat 532 556 IPR002885 -
Vimu5g00082 1498 SUPERFAMILY Chaperone J-domain 1079 1101 IPR036869 -
Vimu5g00082 1498 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 106 629 IPR046960 GO:0003723|GO:0009451
Vimu5g00082 1498 Coils Coil 1446 1466 - -
Vimu5g00082 1498 Gene3D - 1351 1471 - -
Vimu5g00082 1498 ProSiteProfiles dnaJ domain profile. 1080 1209 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00082 Vimu-Chr5 613895 631368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00082 133 627 Glycoside Hydrolase AT3G49170 32.745 2.58e-74 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00082 - - var:108320721 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00082 5 613895 631368 Vimu5g00082 5 613895 631368 ECH