Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00080 ATGGCAAAGTCCAAGAACAATGCCAAGAAGTTGTCTTACATTGCAGTCCCTTCTCAGATCATCAACTCCATATCGTCTTCTTCTCTTCAATCCTTGCTCGAATCTCCCAAGAAATGTGCAAGACATTCCAAATTCTTCAGCTTTGTCAAATGGGGTAGGCCAAGATTGTTCCTTTTCATTCTCTCTCTTCTTGCCTTCTTAGCCATGATCAAGCTGGGCTTCAATCTGGACACCCCATTTCCTCCCTTCCCTTGTGCAACCTCAGTAGGCTTCTCAAAATCCATGCCCGGAGTTGTGTCACAGGAGGGTGGTGTTTTGGATGGTGCAGATGACACTGTTTCAGAGCCTCTGATTACCAGTGTGCAGTTACATGCACAGGTTCCAAGAGGGGTGGAAACTGTTGAAGAGGTTGAAAAGAGTGAGTTTTGGGAGCAGCCAGATGGGTTGGGTTATAAGCCTTGCTTAGGTTTCAGCCGGGAGTATAGGAGGCAGACAGAGGGAATTGTGAAGAACAGGAGGAGGTACCTCATGGTGGTAGTTTCTGGAGGGATGAATCAGCAGAGGAATCAGATTGTTGATGCTGTTGTCATTGCTAGGATTCTTGGGGCTGCTCTGGTTGTTCCTATATTGCAAGTCAATGTCATTTGGGAAGATGAAAGTGAATTTGCTGATATATTTGATTTGGAGCACTTTAAGAGTGTTCTTGCCAATGATGTGAGGGTGGTTTCAGCTTTGCCATCAACACATCTAATGACAAGGCCAGTAGAGGGGAGCCCTCCCATTCATGCCACTCCCAGTTGGATTCGGTCACACTATCTCAGAAGATTCAACAGAGAAGGTGTCTTGCTTTTACGTGGACTGGATTCGAGGCTGACAAAGGATCTTCCTCCTGATCTTCAAAAGCTTAGATGCAAGAGGGAAAGACAATTTGGAACTTCCTTTATATGCCTGTTTGGATATAAAGATGAAAGTGCATCTGATAGCTTCTCCATAGAAAAAAATTCTGAATGTTCTCACTTGCATTTCAGGTTTGCAAAGCCTGTTCAGGAACTTGGTAACAACTTTGCTGAGAGAATGAAAAGCAAGGGACCTTACCTTGCTCTCCATCTACGGATGGAAAAGGATGTCTGGGTGAGAACTGGTTGTCTACCTGGTTTGAGTCCTGAGTATGATGAGATTGTAAAAAATGAGAGGATAAATAGGCCTGAGCTCTTAACTGCAAAATCAAACATGACATACCATGAAAGGAAGCTGGCTGGTCTCTGCCCCTTAAATGCTGTGGAGGTTACAAGGCTGCTTAAAGCTCTAGGAGCTCCAAAAAGTGCAAGAATTTACTGGGCTGGAGGACAACCGTTAGGTGGGAAAGAGGCATTGCAACCACTAATCAATGAGTTTCAAAATATTTACAGTAAGGAAGATCTTGCTTTACCTGGAGAACTAGAACCATTTGCAAATAAAGCTTCCCTAATGGCTGCCATAGATTACATAGTGTCAGAGAAGAGTGATGTTTTCATGCCATCTCATGGAGGAAATATGGGCCATGCAATTCAGGGTCACAGGGCTTATGCAGGTCACAAGAAATATATAACACCAAACAAAAGACACATGCTGCCCTATTTTCTGAACTCTTCCCTCCCTGAAGAAGAGTTCAACAGCATCATCAAGGAATTGCATCAAGACTCATTAGGTCAGCCAGAACTCAGGACTAGCAAGGCTGCAAGAGATGTCACTAAGTATCCTGTTCCTGAGTGCATGTGCAATGACTCATAA 1770 0.4407 MAKSKNNAKKLSYIAVPSQIINSISSSSLQSLLESPKKCARHSKFFSFVKWGRPRLFLFILSLLAFLAMIKLGFNLDTPFPPFPCATSVGFSKSMPGVVSQEGGVLDGADDTVSEPLITSVQLHAQVPRGVETVEEVEKSEFWEQPDGLGYKPCLGFSREYRRQTEGIVKNRRRYLMVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWEDESEFADIFDLEHFKSVLANDVRVVSALPSTHLMTRPVEGSPPIHATPSWIRSHYLRRFNREGVLLLRGLDSRLTKDLPPDLQKLRCKRERQFGTSFICLFGYKDESASDSFSIEKNSECSHLHFRFAKPVQELGNNFAERMKSKGPYLALHLRMEKDVWVRTGCLPGLSPEYDEIVKNERINRPELLTAKSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKSARIYWAGGQPLGGKEALQPLINEFQNIYSKEDLALPGELEPFANKASLMAAIDYIVSEKSDVFMPSHGGNMGHAIQGHRAYAGHKKYITPNKRHMLPYFLNSSLPEEEFNSIIKELHQDSLGQPELRTSKAARDVTKYPVPECMCNDS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00080 589 PIRSF UCP009360 20 307 IPR024709 -
Vimu5g00080 589 PIRSF UCP009360 336 589 IPR024709 -
Vimu5g00080 589 Pfam GDP-fucose protein O-fucosyltransferase 175 522 IPR019378 -
Vimu5g00080 589 PANTHER OS02G0726500 PROTEIN-RELATED 342 587 - -
Vimu5g00080 589 CDD O-FucT_plant 175 527 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00080 Vimu-Chr5 597207 599973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00080 10 589 Miscellaneous Gene Families AT3G07900 59.966 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00080 - - vun:114169624 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00080 5 597207 599973 Vimu5g00080 5 597207 599973 ECH