Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00075 ATGGTTGAACATGTGCAAAGACTTTGCTGTGTTTTGTTATCATACAAAGATAAGAAACAAAGGCTTAAGACAAAGACCATATCAAACAATACAGTGGCAGGAGACCACGACAACATATCATATGCTATAAAAATGTTGTTTGATGAATCAAAATTCATAGGTTGGTTGATAGCTACGATGGCTTCTCTAACTTTTCCTTATTCGTACGTTGTTCTGCTAATTGTTCTCTTTCTCTCATCTTTGTTCAGTGCTACTTCTTCAAACTGTGGTGGTTCTAGTGTGAACTTAACCTCCTCTTTAAACAGCAAAGATTCAACGACGGCATGGAATTCACCTTCTGGCCACTTTGCTTTTGGTTTCCAATCAGTTCTATACGACAACAAGGAGTTCATGTCTGTGCTTGCAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTATGGTATGCAAAGCCAGAAAAAGAAAAAACTCATCTTTTTCCGTTAGGATCAACAGTGAATCTCACAAACAAAGGAATTATCGTGTATGATCCAAAGGGTCATGACATGTTGTGGCGACGTCCAGAAAACAACACTGATTCTTTAGTAACATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGAGGATGGGAAGAAGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCAGAATCTGTCTAGGCCTAGAAGCTTCAGAGCACGCCAATCTGACACGAGTTTTGATGATGGGAATTTTGAACTCAGTTGGCAGGGTGATAGCAATTTGGTTCTTTACCATTCTCCAAAATCAAGCAACGATGATGCTGAAAGCTCTCAGTCTCCAACACACGACGCTTACTGGGCCACTGGAACTGTCGGAACTGATTCACAGCTTTTCTTTGATGAGTCTGGACACATGTACATAAAAAATGGCACGGGCACAGTGATCAGAGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGATGAGAACAAAGCTGTTGCTAATAGTTGCAGTTCAACGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCAGCGGTGACAGGACTAATTGTGAGTGCCCGGAGCATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATACGGATCTTGTAGATTTCAAAGAGTATCCCAATTTAGACTGGCCTCTCTCAGATTATGATAAGTTTGAAACTGGAATGGACAAGGATTTGTGCAGGCAAAGGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGATGGAAGCTGTTGGAAGAAGAAGTATCCATTGAGCAATGGAAGGAAGCACGCGAATGTGACTAGAATAGCTTTTGTCAAGGTGCCTAAAACAGATTTAAGCAATGATGAAAAAGAACAGACTACACTTGTGATTGTCATATCAATACTCCTTGGAAGCTCAGTGTTCATCAATGTCCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAACAGTCAGAACGTGTCAGTTGGTACAGTCAGTCACTTTACCTACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTGGAGGTGCTTTTGGAAAAGTTTATAAAGGGGTGTTGAGATCAAACGCAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAAGAAGGTGAGAAAGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAGTACATGAGCAACGATTGGGCTTATCGATGTTATAGCCAAGGGAATGTAGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGGATGATATGAAGAGGCTGGAGAAGCATGTAATGGTTGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCTTCCATGAAAAAGGTTACACAGATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGCCCTTCTATCTTCATTTCATCTTCTTTTTAA 2223 0.4188 MVEHVQRLCCVLLSYKDKKQRLKTKTISNNTVAGDHDNISYAIKMLFDESKFIGWLIATMASLTFPYSYVVLLIVLFLSSLFSATSSNCGGSSVNLTSSLNSKDSTTAWNSPSGHFAFGFQSVLYDNKEFMSVLAVWFAKDPNKTMVWYAKPEKEKTHLFPLGSTVNLTNKGIIVYDPKGHDMLWRRPENNTDSLVTCAFVLDNGSFELVDEDGKKVWESFEEPTDTILPGQNLSRPRSFRARQSDTSFDDGNFELSWQGDSNLVLYHSPKSSNDDAESSQSPTHDAYWATGTVGTDSQLFFDESGHMYIKNGTGTVIRDITNGGSDEFFYMARIDPDGVFRLYRHPKDENKAVANSCSSTWWSVEQKHPDDICLSFTKQTGNVICGFNSYCVSSGDRTNCECPEHYSPFEHDNLIGCRPDFPLPSCNRDGWEQNTDLVDFKEYPNLDWPLSDYDKFETGMDKDLCRQRCLEDCFCAVAIYGDGSCWKKKYPLSNGRKHANVTRIAFVKVPKTDLSNDEKEQTTLVIVISILLGSSVFINVLLLVALFAAFFIFYHKRLLNSQNVSVGTVSHFTYKELEEATTGFKQMLGGGAFGKVYKGVLRSNASRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNDWAYRCYSQGNVAKLVENDEEAKDDMKRLEKHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPCPSIFISSSF 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00075 740 SMART blect_4 91 224 IPR001480 -
Vimu5g00075 740 ProSitePatterns Protein kinases ATP-binding region signature. 589 613 IPR017441 GO:0005524
Vimu5g00075 740 ProSiteProfiles Protein kinase domain profile. 583 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00075 740 Pfam Protein tyrosine and serine/threonine kinase 585 663 IPR001245 GO:0004672|GO:0006468
Vimu5g00075 740 SUPERFAMILY alpha-D-mannose-specific plant lectins 245 347 IPR036426 -
Vimu5g00075 740 Gene3D - 91 222 IPR036426 -
Vimu5g00075 740 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 664 732 - -
Vimu5g00075 740 FunFam S-receptor-like serine/threonine-protein kinase 556 660 - -
Vimu5g00075 740 SUPERFAMILY Protein kinase-like (PK-like) 560 668 IPR011009 -
Vimu5g00075 740 PIRSF SRK 662 739 IPR024171 GO:0004674
Vimu5g00075 740 PIRSF SRK 62 664 IPR024171 GO:0004674
Vimu5g00075 740 Coils Coil 675 695 - -
Vimu5g00075 740 SUPERFAMILY alpha-D-mannose-specific plant lectins 133 293 IPR036426 -
Vimu5g00075 740 ProSiteProfiles Bulb-type lectin domain profile. 91 222 IPR001480 -
Vimu5g00075 740 Pfam D-mannose binding lectin 145 242 IPR001480 -
Vimu5g00075 740 CDD PAN_AP_plant 433 511 - -
Vimu5g00075 740 Gene3D Phosphorylase Kinase; domain 1 555 656 - -
Vimu5g00075 740 Gene3D Transferase(Phosphotransferase) domain 1 657 728 - -
Vimu5g00075 740 Gene3D - 224 369 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00075 Vimu-Chr5 569319 572195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00075 506 663 Receptor kinase-like Gene Family AT4G23220 35.583 9.23e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu5g00075 B_lectin 5.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00075 - - vra:106753716 1177.54