Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00073 ATGATTGAGAGGAGGGTGACTCTTCAGGCAGCTGGCGGTGGTCGGATTTATCGAGCTTATCGCACTAAACCGAAGAGGAGAAAAGGGTTTTTGTTGTTGGTGGCTCGCGGTGGCCGTGACTTGGGGCCTGGGCTCACTCCAGACGGAGATCGATGGTGGAGGGAGAGAGCTTCTCCGACCCAAAAGAGAGGAGGAGAAGGGAACCCGATACTAGAGTGGGAACGCCCCCGACGGCGAACGACGGGGATGCCGACGTCTTGGCCGGTGACGACAACGTCTTGGCCAGCAACTGGCGGTGGAACACACATCCCAGGGATCGTTTTCCCTTGCGTACGAGGAGTTCTTAGCGCGACATGGCAGATAATCCACAGTAAACCTGGCAGAAGACGTGGCAGGGTCGAATATAACCGGTACCAAAGGCAAAATAAGTGGGTACTTCATGTGAAGTTTTTGCACATGAAGGAACATAACCGATACCTAAGGCAAAATAAGCGGGTACTTCAGGTGAAGTTTTTGCACATGAAGTTCTTGGCGAAAAACCTTGCACCAATCAATTTCTTGTTACAGTTTAATGGGTTGAAGTTTTTACCTCTCTCACACTCACCTTTCCTACGACACATCCGAGAAGATGACATTGTTCTGCCTAGGTCGAGGCGGCAGGGTCGAGGCAGCGAGGACTCTGTTGAAGGGTCTCGCCTTCTGCGTTTCTGCTGGTTGCGCGACTGCGGCGAGTTCGATTTAGGCTGCGGCATGATTCATGGTGATGAAGATGAGCACATAGATGTTGGAAGTGCAAGATGGTTGAGCATGAGTGATCTCTGCGGTGGTGCTGATGGTGGGGAATGGCGACGGCGGTTGATGCTAGATGAAGTTTATATGATTCACATTTTTACTTACAAGATAAAAAATGAGTTGTCTGATTTTTGTTCAATAAACAACAGGAAATCTGATTCCCAGAAGATATTGATTGTTAAATTCAAGCATATAATGAAGGAGCTCCAAGGGGCTATAATTATTGGTTTAGCTTTTCAAGCTTTACTTGGATATACTGGACTTATGTCACTGTTAGTAAGTGGTGTGCTAAAAGCTGAGAAATTCACGTTACCCGAATTGGAAAGTATAGAAGGAACCACAACAAGGAGCGACGGTGACCGCAATTGCCGGAATCAGAGCCTAAGGGGATCGACGACGCCACGACGAGTGTCCGAGTCGGAGTCCGAGTCGGAGTCCGAGTCGACCCGCCGCGATCTCATACACTCATTCATTTTCTCCGACTCACGAATCCAACCTTTTTTGTTTTTCTTCGCTTCTTCTCTTCCAATTCCAATCGCTCCACCGGATTTCTTCGATCTGCAAGCTGGCTATGGACTACGAACCCTACGACACCGCTACGACTTATGGCATCGATTCATCGGACGATTTTTGTTTCTGTTTGGTTTTCCTCGATTAACAGCTACTGAGATACGCTCTTGCTTTATGGTTCTTGCTCGTTTACTCGCCCGGCCTGAAATTGGGGGGGAACGGAAAGATACTGTCTGTTCTTTGAGTCAAGATCCTCGAATGTCTCTTTTTCGTGCGTTTGTCTTTGAATGGGAACTGATGATGATCTTCCACCAACCCATCAAAATAGAATTTCCAGGGGAGGAGGTGGAGGAGGAGGAGGAGGAGGGGGACGTCTTGCCGGGAATGGAAGATCTGCTGATGTATGGGGAAATTGATATGGAGACCCAGATTCATCAGCTTGAGCAAGAAGCTTACAGTTCAGTTCTAAGAGCCTTTAAAGCTCAAGCTGATGCCATTACTTGGGAAAAAGAAAGTTTAATTACAGAGCTGAGAAAAGAGCTGAGATTGTCGAATGAGGAGCACCGAGAACTTCTTGGTCGAGTTAATGCCGATGATGTGATCCGGAGGATAAGGGAGTGGAGACAGACAGGAGGCCATCAGCCTGGTGTACTTAATACTGGTCAAGGTCTTCATGACTCGGTTCCCAGTCCCACAGTCTCTGCTTCTCGCAAGAAGCAGAAGATTACACCATCTGTACCATCACGATCTTTCGCCGGGCCTTCTCCCCCGTTTCACCCCCAAACAGTGAGTGCACCCCACCAACCATCTTCTTCTGCAGCAAAACGAGGATCTGTTCCTGGATCAAAAGGGAAAAAACACAAACCAGGTCAAATATTACCTGGTGTCTCTTCGATGAAGCAGTATCCTTCCACTGGACCAGGTGGAAGGACTCAAGTGCCTAATAGAGCTGTCACGGGTGAGCATGCAGAGGGAGCATCATTTGACTCTTTGGTTGGTAGGAGAGTGCGGACAAGATGGCCTGATGATAATAACTTTTATGAAGCTGTTATCACAAACTACAATCCGGCTGATGGACGCCATAATCTGGTCTATGACATGGGGAGTGCAAATGAAACATGGGAATGGGTTAATCTTTCAGAGATATCTCCTGAAGATATTCAGTGGGTTGGTGAGGATCCAGGAATCAATCATCGTGGGGGTTTTGGGGGCTCTGGTCATGGGATGAATAGGTCTGTTGGACGGGATGGTGTTCCTGGAGGTGGAAGAGGCAGGGGAGCTACAAAGGGGCAATCCAGAAAAGATTTTTTGTCATCTCAAAATGGCATAGGAAAGAAGGCGCCTGATGATATACAAATACTTCACACAGACACACTAATCAAGGAGGTAGTCATGCTGAGCCCTGATCACATGAAATATAGCAGTTCACTTGCTGTCTCTGTAAAGTTTCCGCCTGAGTATTCTCCAGAGGTGTTGGGGTTCTGCATTGCTCAAAACTCTTCTTGGGTCAATGGATTCTGGGTGGAGAGGGTATTCAGTGCAAATCATCCCGATCCCCTTGAAATTGAGAAAGCAAAGAAGGTGTTGAAGGATCATGAACAGGCTCTTATTGATGCAATTGCAAGACTCAATGATCTTTCTGATGGTGAAAGTGGTACATCTCAATTTTTGTATCTCATTGCAATACTTCTGATTTTTTCAACTCCAGACAGCGGTATAGCAGATCATACGGTGGCTGCTCCACTAAATACAAACAGAGGGAGAAGGAGTTTTCAAGAAGCTGCTGTAAAATCCAACCTGAACAGCCATAATGGGGAGGGTCTTGGCCAGAGAAGAGTTGGTATGGCTGGAAAAAGGGCAGCAGATAAACCAGTGATGGGGCTGGCCATCATTTCTCACATGCTCAATCAATGGATCGAGAGTGACGAAGAGGATCCGTTACTTTGTACAATGAGCAGAGGAGGCAATGTGGTGCGACAGTTCTGGAAAAAGGCTTCAAAGAAAGAACTGGCAAAGCGCACTATGGCTGCTAATAGAGTACTTTGTTGA 3351 0.473 MIERRVTLQAAGGGRIYRAYRTKPKRRKGFLLLVARGGRDLGPGLTPDGDRWWRERASPTQKRGGEGNPILEWERPRRRTTGMPTSWPVTTTSWPATGGGTHIPGIVFPCVRGVLSATWQIIHSKPGRRRGRVEYNRYQRQNKWVLHVKFLHMKEHNRYLRQNKRVLQVKFLHMKFLAKNLAPINFLLQFNGLKFLPLSHSPFLRHIREDDIVLPRSRRQGRGSEDSVEGSRLLRFCWLRDCGEFDLGCGMIHGDEDEHIDVGSARWLSMSDLCGGADGGEWRRRLMLDEVYMIHIFTYKIKNELSDFCSINNRKSDSQKILIVKFKHIMKELQGAIIIGLAFQALLGYTGLMSLLVSGVLKAEKFTLPELESIEGTTTRSDGDRNCRNQSLRGSTTPRRVSESESESESESTRRDLIHSFIFSDSRIQPFLFFFASSLPIPIAPPDFFDLQAGYGLRTLRHRYDLWHRFIGRFLFLFGFPRLTATEIRSCFMVLARLLARPEIGGERKDTVCSLSQDPRMSLFRAFVFEWELMMIFHQPIKIEFPGEEVEEEEEEGDVLPGMEDLLMYGEIDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWRQTGGHQPGVLNTGQGLHDSVPSPTVSASRKKQKITPSVPSRSFAGPSPPFHPQTVSAPHQPSSSAAKRGSVPGSKGKKHKPGQILPGVSSMKQYPSTGPGGRTQVPNRAVTGEHAEGASFDSLVGRRVRTRWPDDNNFYEAVITNYNPADGRHNLVYDMGSANETWEWVNLSEISPEDIQWVGEDPGINHRGGFGGSGHGMNRSVGRDGVPGGGRGRGATKGQSRKDFLSSQNGIGKKAPDDIQILHTDTLIKEVVMLSPDHMKYSSSLAVSVKFPPEYSPEVLGFCIAQNSSWVNGFWVERVFSANHPDPLEIEKAKKVLKDHEQALIDAIARLNDLSDGESGTSQFLYLIAILLIFSTPDSGIADHTVAAPLNTNRGRRSFQEAAVKSNLNSHNGEGLGQRRVGMAGKRAADKPVMGLAIISHMLNQWIESDEEDPLLCTMSRGGNVVRQFWKKASKKELAKRTMAANRVLC 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00073 1116 CDD Tudor_Agenet_AtEML-like 766 816 - -
Vimu5g00073 1116 FunFam Protein EMSY-LIKE 3 isoform A 569 699 - -
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 835 877 - -
Vimu5g00073 1116 PANTHER PROTEIN EMSY-LIKE 4 942 985 IPR033485 GO:0050832
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 383 399 - -
Vimu5g00073 1116 SUPERFAMILY Tudor/PWWP/MBT 764 804 - -
Vimu5g00073 1116 SMART ENT_2 574 647 IPR005491 -
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 731 746 - -
Vimu5g00073 1116 Coils Coil 608 628 - -
Vimu5g00073 1116 SUPERFAMILY ENT-like 568 686 IPR036142 -
Vimu5g00073 1116 Gene3D - 759 810 - -
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 647 683 - -
Vimu5g00073 1116 FunFam Protein EMSY-LIKE 3 764 816 - -
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 377 411 - -
Vimu5g00073 1116 Pfam ENT domain 576 643 IPR005491 -
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 645 749 - -
Vimu5g00073 1116 Coils Coil 956 976 - -
Vimu5g00073 1116 MobiDBLite consensus disorder prediction 45 70 - -
Vimu5g00073 1116 Gene3D ENT domain 567 679 IPR036142 -
Vimu5g00073 1116 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 574 661 IPR005491 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00073 Vimu-Chr5 542107 557023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00073 325 357 Organic Solute Cotransporters AT2G27810 78.788 8.15e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00073 - - gmx:100791651 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00073 5 542107 557023 Vimu5g00073 5 542107 557023 ECH