Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00063 ATGGAGGCGGAGCCCGCGTCTGGGCCCGGGCCTGAGTTTAATTCGAAGGAGGAAGCTTTCGCATTCTACCAAGCCCACGCGAAATCTGTGGGTTTCTCCGCCATAATCAAAGCCAGCCGCCGATCCCGAGTCTCCGGCAACTTCATCGACGCCAAATTCGCCTGCACTCGCTACGGCGCCCCACCAAGCCACAAGCCCAAACGGGCCCCTTCCCGGGCCAAAACCGATTGCAAGGCCTCCATGCACGTGAAACGAACACCCCACGGTACATGGATCATCTCTTCTTTCATCAAACACCATAACCACCAAATTTCCCCCATTCACAGTAGCCTTAAACCCAATAATAATGTTAACAAGGCAAGTCCCTCAAGGAAACTCAAGGTTAAAAAAACACCGCAATACTTAACTTTCGCCCAAGGTGACCTTCAATTTTTGCTCAACGCTTTCATGTCTATGCAACATGAAAACCCTAATTTCTTTTTCGCGGTCGATCTTAACGAGGAGCAGCGGTTGAGGAGTGTTTTCTGGGTGGACGCTAAGGCTAGGCTTGATTATAGACATTTTAGTGATGTGGTGCTTTTGGACACCACTCACGTTAAAAACGAGTGTAGATTGCCCTTTGTTCCGTTTGTTGGTGTGAACCACCATCTTCAGTTTTTGTTGCTGGGATTGGCCTTTGTGTCTGATGGGTCTGAATCCACGTATGCGTGGCTGATGAGGAATTGGTTGAGGGCAATGGGAGGACTTGCTCCAAAGGTGATGCTCACTGACCGTGATGAAGTGCTGAAGAGAGCGGTTGCTCAAGTGGTTCCTGAGTCTTGTCATTGCTTTTGTCTGTGGCATGTGTTGAGTAAGGTTCCAGAGAAACTCGGTCGCCGGATTCATGGGCACGGTGGGGAGTTTATGAGTGGGTTTAGTGAGTGTGTTTTGAGGTCTAGGACAAAGGAGCAGTTTGAGAAGAGGTGGGGGGAGATGGTTGAGAGGTTTGACATGGGTGATGAGAGTTGGTTGTGTGAGATTTATGAGGATCGGAAACAGTGGGTACCTGCGTTTATGAATGGCAGGGTTTTAGCAGGAATGTCGACTGTGCAGAGATCAGAAGCCATGAACTGCCTGTTTGATAAATATGTGCAGAGGAAAACTACTATGAAAGAGTTTCTGGAGCAGTACAGAGTGGTGTTGAGGGGTAAGTGTGAGGAGGAAGCCAAGGCTGATTTTGAAACTCTGCGTAGACAGCCAGCGTTGAAGTCCCCATCACCTTTTGGGAAACAAATGGTGGAGTTGTACACCAATGCAGTGTTTAAGAAGTTCCAGGGTGAGGTGTTGGGAGCTGTTGCTTGTCATCCAAGGAAAGAGAGCGAAGATGGGACAAAGAAAATGTTTAAGGTTCAGGATTTCGAGGACAATCAAGATTTTGTTGTGACGTGGGATGAATCGTCTTCAGAAGCATCATGCTCTTGCTATTCATTTGAGTTCAATGGCTATCTTTGTAGGCATGTAATGATTGTGCTACAGATTTCTGGTGTACATAGCATCCCACCTCGGTATATATTAAAACGCTGGACAAAAGATGCCAAGAAAAGAGATCTGTCTGTGGCAGATGTCGTTGTCTCTGACTCTAGGGCTGAGCGCTATAATAATTTATGTCAACGAGCTTTTGAGTTGGGTGATGAAGGGTCTTTATCATACGAGACTTACATTGCTGCTGTAAAGGCGTTGGAAGAAGCTTTGAGAAAGTGTGAGAACCTGGATGGTTCAATTCAGAGAGTCAGAGAACCGAACCTTCCATGTTTTGGTTCTCAAGAGGTAAATCTAAGTAATACTGCTGATCATACTAACAAAAAGAATAGTGCTCTTAGAAAAAGAAAGGTAAGCCCTGAACCAGAGATCATTGCTATGGGAGTCGATTCTAGCTGGCTGCAAATGGAAAACCCCAATGCACAAGCAGCTGGCCTTCCTTGTTCATATAAATCGCAGCAGAGCATTCAAAAGATGGATCGACTGAACTCCAGGGCTCAGAATCGGGATGGCTATTTTTCTACTCAGCGGATTGATTTTGGAATGTGCCACCAATTGAATTCTGTAGCTGCTATTCGTAATGATTATTATTGCAACCAGCATGGCATCCAAGACCGGGGACAGTTGAACTCAATTGCATCCATCCATGATCCCTGTTACATGGCCCCACAAAGGATGCAACCGATGGGTCAAGCCGATGGAGGGCCATCCTCACAACCGCATGGGATGGAGGTAAAGGTAAAACAGCTAAGTTCAAGGCACCAGTCTCAGTGA 2292 0.4677 MEAEPASGPGPEFNSKEEAFAFYQAHAKSVGFSAIIKASRRSRVSGNFIDAKFACTRYGAPPSHKPKRAPSRAKTDCKASMHVKRTPHGTWIISSFIKHHNHQISPIHSSLKPNNNVNKASPSRKLKVKKTPQYLTFAQGDLQFLLNAFMSMQHENPNFFFAVDLNEEQRLRSVFWVDAKARLDYRHFSDVVLLDTTHVKNECRLPFVPFVGVNHHLQFLLLGLAFVSDGSESTYAWLMRNWLRAMGGLAPKVMLTDRDEVLKRAVAQVVPESCHCFCLWHVLSKVPEKLGRRIHGHGGEFMSGFSECVLRSRTKEQFEKRWGEMVERFDMGDESWLCEIYEDRKQWVPAFMNGRVLAGMSTVQRSEAMNCLFDKYVQRKTTMKEFLEQYRVVLRGKCEEEAKADFETLRRQPALKSPSPFGKQMVELYTNAVFKKFQGEVLGAVACHPRKESEDGTKKMFKVQDFEDNQDFVVTWDESSSEASCSCYSFEFNGYLCRHVMIVLQISGVHSIPPRYILKRWTKDAKKRDLSVADVVVSDSRAERYNNLCQRAFELGDEGSLSYETYIAAVKALEEALRKCENLDGSIQRVREPNLPCFGSQEVNLSNTADHTNKKNSALRKRKVSPEPEIIAMGVDSSWLQMENPNAQAAGLPCSYKSQQSIQKMDRLNSRAQNRDGYFSTQRIDFGMCHQLNSVAAIRNDYYCNQHGIQDRGQLNSIASIHDPCYMAPQRMQPMGQADGGPSSQPHGMEVKVKQLSSRHQSQ 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00063 763 MobiDBLite consensus disorder prediction 730 763 - -
Vimu5g00063 763 Pfam MULE transposase domain 191 284 IPR018289 -
Vimu5g00063 763 Pfam FAR1 DNA-binding domain 22 105 IPR004330 -
Vimu5g00063 763 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 582 IPR031052 GO:0006355
Vimu5g00063 763 Pfam SWIM zinc finger 472 504 IPR007527 GO:0008270
Vimu5g00063 763 SMART 26again6 483 510 IPR006564 GO:0008270
Vimu5g00063 763 ProSiteProfiles Zinc finger SWIM-type profile. 472 508 IPR007527 GO:0008270
Vimu5g00063 763 Coils Coil 563 583 - -
Vimu5g00063 763 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00063 Vimu-Chr5 497615 501547 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu5g00063 MULE 8.7e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00063 - - aprc:113869938 1067.76