Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00061 ATGGATGCCACTCACTCCATGTTCTGCAACAATGATCTGGTTAACCCCCTAAGCTCAATGGGCATGCAAGTGTCCTGCATTCTTGTGGTGTCACATATCTTCAACGTTGTGTTTAGGACTGTGGGTCAACCTGGACCAATTGCGCAGATTCTGGTAGTAATCAATCACCACGCTGGGTTGGCGCTAGGTCCAATGTCACACATTCCGTATATAAAGGCTACATTTTTTCCTGCTAGCTCAATAAACTACTATGAAGTTGTGAGCTTCTTCTGTCGCATACACTTCATGTTTTTGTTTGGGTTAGAGATGAATATGCACTACGCAATGCGCAATCTGCGTAGGGTAAACTTTGTAGCTTGTGGTGGTGCTCTGATGGGTGCTGTTTTTGGTCTATCTGTCTCATTTTACTTGCATCAAGAGCTAAACACCCTTGACAATGCCCCTTTGTATTATTTTTCAATGATCATCATGCTAGTGGTGTCATACACAAGCTCCCCTATGGTGATTCGTTTGGCAGCAGAGTTGAGGTTTGCAGCATCAGACGTGGGGCGAACGGCCGTGTCATCTGCGTTGATCACAGAAATGGGGTGCTTGTTGCTCTTCAACGTCATGGTTAACTGGAGAAAAGAAAATCACATTTCTTCTGGTTTCGGTTGCCTTATAATCACTGTCGTGGTGGTTTACCTTAACCGGCACTTGGCAGTTTGGTTAAACGCAAGAAATAGAAACCAGAAGTACCTCAAGGCTCCTGAGTTGTTACTCATTCTGTTCATACTTCTGACTAGCTCAATGATAATAGAGATTTGTGGTTACAACAGTATTATTAGTTGTTTCACCATTGGTTTGTTGTTCCCCAAGGAAGGGAAAACAGCCAGAACATTGCTGCACAAACTTGGTTATTCTATTTACAACTTTGTGCTTCCGGTATATTTTGGCTACTTGGGGTTGCAGTGTGACCTGATAAATGTCTTCAAGAGCTTGGAGCGTGTGGCCAATATGGCCATATTGATATTACTGAGCATTGGAAGCAAGCTTGGTGGAACTCTTATAGCTACCCGCTACCTCAAAATTCCCACAAGTGAAGGTATTTTTCTTGGCTTCATATTGAACACTAGAGGTTATGCCGACCTTCTATTCATTGGTGCAGCAGCAAAGCAAGTAATTACTTTCGATTCCGAAGCGTACAATGTTCTGTTGGTATCAATAGTACTCAACACAATAATATCAGGAGTAGTTGTGGCTTTTCTAGTCAGAGGGGAAGACAAAATGTTTACAAGCAACTACACTGCAATTGAACCACAACAAATGGAAGATGAGCTCAGAATTCTGGCTTGTGTGTATGACCCTCGTCAGGTATCTGCCATACTTGCCACAGTGCTAGCAATACATGGCTCTAGAGTATCACCATCTACCACTTACTTAATGCACCTAATAGAGCTTGTGAAGAAGATCAAGTCCAACTTGTTGTACCATGAGAAAGAAACTGCTGACCTTAGCGACGATGAGGACTATGGGGGCAATGATGTGGTGGAAATAAACAATTCTTTGGATACCTTCACTGCAGATACAAAGATTTTAGTCCACCAAAGAAGGGCAGTGTCTTCTTTCCCGTCCTTGTATGAAGATGTGTGCAATGAAGCAGAAGATCTCCAAGTGTCAATTGTGCTACTCCCCTTCCACAAGCACCAACGCATTGATGGGAAATTGGAAAGTGGAAAAGAGGGTATAAGGATAACCAACCAGAAGGTGCTAAGACATGCCCCTTGTTCAGTTGGTATAATAGTGGAAAGAGGCCTTGCAAGGGTACCTGGCTTCTCACAGCTAGTGGCATCTGAAGGCATACAAAACATTGCAACACTTTTCTTCGGTGGCCCTGATGACCGTGAGGCTATTGCATGGAGCCTACGCATTGCAGGAAGTCCACGCGTGAACTTAACGATCATAAGATTTTTGCTGACTTCTTCATCACAGAACGAACAGATAGAGAGTGGACAATCAGAGGAAAAGGAAATTTTGATGTCACTGTCTGGGGAGGAGACTGTGAATGAGATTGACAACACATTCATGGTGGACTTCTACAACAGGTATGTGACTTCAGGCCAAATAGGGTATGTGGAGAAGTTTGTGAAGCATGGAGCAGAAACGGTGGATGCTTTGAAAGAGATAGGGGACATGTATTCTCTGTTTATAGTAGGAAAAGGTGGTAGAGGGCAAAGTTCACTAACAATTGGTATGAGTGACTGGGAAGAATGCCCAGAACTGGGAACTGTTGGTGATGTTTTGGCCTCTTCAGACTTCGATATTCATGGCTCAGTTTTGATTGTTCAGCAACATAGAGATGTCAAGAAAGGCCTATTGCATGATTAG 2367 0.4335 MDATHSMFCNNDLVNPLSSMGMQVSCILVVSHIFNVVFRTVGQPGPIAQILVVINHHAGLALGPMSHIPYIKATFFPASSINYYEVVSFFCRIHFMFLFGLEMNMHYAMRNLRRVNFVACGGALMGAVFGLSVSFYLHQELNTLDNAPLYYFSMIIMLVVSYTSSPMVIRLAAELRFAASDVGRTAVSSALITEMGCLLLFNVMVNWRKENHISSGFGCLIITVVVVYLNRHLAVWLNARNRNQKYLKAPELLLILFILLTSSMIIEICGYNSIISCFTIGLLFPKEGKTARTLLHKLGYSIYNFVLPVYFGYLGLQCDLINVFKSLERVANMAILILLSIGSKLGGTLIATRYLKIPTSEGIFLGFILNTRGYADLLFIGAAAKQVITFDSEAYNVLLVSIVLNTIISGVVVAFLVRGEDKMFTSNYTAIEPQQMEDELRILACVYDPRQVSAILATVLAIHGSRVSPSTTYLMHLIELVKKIKSNLLYHEKETADLSDDEDYGGNDVVEINNSLDTFTADTKILVHQRRAVSSFPSLYEDVCNEAEDLQVSIVLLPFHKHQRIDGKLESGKEGIRITNQKVLRHAPCSVGIIVERGLARVPGFSQLVASEGIQNIATLFFGGPDDREAIAWSLRIAGSPRVNLTIIRFLLTSSSQNEQIESGQSEEKEILMSLSGEETVNEIDNTFMVDFYNRYVTSGQIGYVEKFVKHGAETVDALKEIGDMYSLFIVGKGGRGQSSLTIGMSDWEECPELGTVGDVLASSDFDIHGSVLIVQQHRDVKKGLLHD 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00061 788 PANTHER CATION/H + ANTIPORTER 10 779 - -
Vimu5g00061 788 Gene3D - 19 424 IPR038770 -
Vimu5g00061 788 Pfam Sodium/hydrogen exchanger family 28 418 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00061 Vimu-Chr5 494566 497286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00061 11 788 Antiporter Super Family AT1G79400 38.677 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00061 K26731 - gmx:100804522 1394.79