Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00059 ATGGAAAGAGAGTTAGAGAGAGGGTACGTGAAGAAGGGACCGTGGAGTAGAGAAGAAGATGAAGTTCTTCTGAGACATGTGAGAAAGTATGGTCCAAGAGAGTGGAGCTCCATTCGATCCAAAGGCTTCTTGCCACGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGATGCAAGTTTTCGGCAGAAGAAGAGAGATTGGTGATAGAAATGCAGACACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCGGGAAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTTAAAGTTGCAGAAAAGCAAGGGAAAAACTCCTCTTACTCAAGTGCTAGCGGATAAGGTATTTCAGGCTCCTCCATGCAGTTCAAACCAGGTGGAGGAAAACCTTTGTTACTCTACTTCCTACATGGGAAACACCGAGGTGTTCGAGATGATCAACCTTCAAGATTTGGTAAAGCCAAACTATGAGCAGATGGAAAATGATTACTTGAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGAACAACTTCCCTGTGCTCCCTGAGCCACTAATCGACTTTCCACTCTTCCCAGAATGCCAGGACCTTGTTCCAGAGACCTTTGATCCAAATTTTATTGATGGGTTCGACGAGAAGAAATGTTCAGAATTTGTATGCAGCCAGAAGCTTGGGACCGGGTTGCCAACTCTTGGATTGGAGGAAAATTATCAAATTACAACTTCAAACGTCTTATTCAAGGACTTCCCAAGTGAGATTTTTGAATACTTTGAGCAGATTCCAACCTCAACAAAACAATGA 915 0.4393 MERELERGYVKKGPWSREEDEVLLRHVRKYGPREWSSIRSKGFLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERLVIEMQTQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPPTLKLQKSKGKTPLTQVLADKVFQAPPCSSNQVEENLCYSTSYMGNTEVFEMINLQDLVKPNYEQMENDYLSAVEVEATPLHTVPSFESSSGNNFPVLPEPLIDFPLFPECQDLVPETFDPNFIDGFDEKKCSEFVCSQKLGTGLPTLGLEENYQITTSNVLFKDFPSEIFEYFEQIPTSTKQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00059 304 FunFam MYB transcription factor 12 64 - -
Vimu5g00059 304 Pfam Myb-like DNA-binding domain 15 65 - -
Vimu5g00059 304 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vimu5g00059 304 Gene3D - 67 136 - -
Vimu5g00059 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Vimu5g00059 304 Gene3D - 5 65 - -
Vimu5g00059 304 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Vimu5g00059 304 FunFam Transcription factor GAMYB 67 135 - -
Vimu5g00059 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Vimu5g00059 304 CDD SANT 14 59 IPR001005 -
Vimu5g00059 304 CDD SANT 68 107 IPR001005 -
Vimu5g00059 304 SMART sant 65 113 IPR001005 -
Vimu5g00059 304 SMART sant 11 61 IPR001005 -
Vimu5g00059 304 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vimu5g00059 304 PANTHER TRANSCRIPTION FACTOR DUO1 5 303 - -
Vimu5g00059 304 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00059 Vimu-Chr5 485873 487390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00059 4 300 MYB Transcription Factor Family AT3G60460 42.122 9.95e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g00059 Myb_DNA-bind_6 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00059 K09422 - gmx:100793689 478.404