Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00058 ATGTCTGAAGGCTATTCCTGCGGCTGCTCCGATTCCGACTCTTCTTGCGGCTGTTGGTCCACCGCCGCCAGTGCCACCGCCACCGCCACCGCCACTGCCGCAACCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTTTACCTCCGACCGCGAACCAGGCTCCATTGGATCACCAACTTTGGTCTTCCCAACGACCACAACCACAATGCCATATCCACGGCTGAATTGGGCTTGAACAAGGAACTCAGAGAGATGTTGCCCATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGACACCCAATGTTCAGTATGCCTTATCGACTACCAGCCAGATGATAGGCTTCAACAGATACCTGCATGTCGCCACACATTTCATATGAGCTGCATTGATCTTTGGCTTACCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCTTACTAACCATAGCTAAATCTTCCACACATACATCTGATATGCAGTCACAGTCACAGAACAATGAAGAAGCACAAACCGTGGAATTATCTGAATCAAGATCTACTATGCATACAGAAACCACTGTCCTCCGAAATGTCTCTGGAGAAGTTGCAATCAGCGCTCCCTGCATTGATGTTGAAAGGCAAAATGAGTAA 699 0.4893 MSEGYSCGCSDSDSSCGCWSTAASATATATATAATRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITNFGLPNDHNHNAISTAELGLNKELREMLPIIVYKESFSVKDTQCSVCLIDYQPDDRLQQIPACRHTFHMSCIDLWLTTHTTCPLCRFSLLTIAKSSTHTSDMQSQSQNNEEAQTVELSESRSTMHTETTVLRNVSGEVAISAPCIDVERQNE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00058 232 Pfam Ring finger domain 123 166 IPR001841 -
Vimu5g00058 232 PANTHER OS11G0150450 PROTEIN 51 203 - -
Vimu5g00058 232 FunFam RING-H2 finger protein ATL7 90 171 - -
Vimu5g00058 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 173 IPR013083 -
Vimu5g00058 232 CDD RING-H2_EL5-like 123 166 - -
Vimu5g00058 232 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Vimu5g00058 232 MobiDBLite consensus disorder prediction 178 205 - -
Vimu5g00058 232 SMART ring_2 124 165 IPR001841 -
Vimu5g00058 232 SUPERFAMILY RING/U-box 108 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00058 Vimu-Chr5 480986 483170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00058 32 199 C3H Transcription Factor Family AT1G33480 54.971 2.50e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00058 K19039 - gmx:100794211 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00058 5 480986 483170 Vimu5g00058 5 480986 483170 ECH