Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00054 ATGGAGGATTCGGTTAAAGATGCAACCGAGCAACAGAAGAAGATGATTGTGTCATGGGATGAAATGATAGAGAAGGCTTTGGAGAACTTTGGATGGACACAGTTCCTTCAATGCATCCTCGTCTCAGTCGTAATGTTCTTCGATTCACAGCAACTATTCATAGGAATCTACACTGACCATTACCCAACATGGCACTGCACCAACCACACGACAACATGCACCTCAAATTCCGACATCTGCAAGCTCCAAAAGTCTTCATGGGAATGGGATGGTCCCTCTTCCAAGACAATCATTTCACAATTTGGCCTTGAATGTGTCAGCAGCTTCATCACAGGTTTACCCCAATCTTCCTTCTTCTTTGGTTGCCTTCTCGGTTCCTTTCTTCTTGCCACCATGGCCGACACATATCTCGGAAGAAAAAACATCATCGTTCTGTCTTGTTTATCAATGTCCGTAATTTCAATCGTCATCATTTTTTCCACCAACGTTTGGATATACTCAGCCTTAAAATTTCTCATTGGATTCTGTCGATCGTGTATCTCAACATGTTGCTTGGTGTTACTCACAGAGAAAGTGAGCACAAAGTGGAGGTTTACGGTGGCGATTATACAGTTTGTTTTCTTCACATCAGGGTACATGTTCTTGCCAGGTGTGGCTTATGCCAATAGGAATTCTCCATGGAAATATCTTTACGTGTGGACTTCTGTTCCTGCTATCTTTTACTCTTTCATTGCTTACCTTTGCGTCACCGAGTCTCCAAGGTGGCTTCTCATGCAAGGTCGAGTGAAAGAAGCAATGGAAATGCTGAAAGGAGTTAATGAAAACGCTGCAAATTTAAATCCAGCAGAAGAGCCTCTGGCAGAAGAAAAAAAGGTTTCATTTTGTGAACTCTACTCATCGATAGTAGTGTTGTTAAGAAGAAGTTGGGCTCGAAAACGGATGGTGGGAGTTATGGGGTTAGGTCTTGGCATTGGAATGGTGTACTATGGGATGCCACTGGCAGTGGGAAACTTGAACTACAACATATACATTGCAGTTGTGTTGAATGCGTTGATGGAAATACCGTCTTGCGTGGTGACGTATTTCTTGAGAAACTGTGAGAGAAAGTTATCGATTCTTGTGTTCTCAGTAGGAAGTGGGATATGTTGCATAGTGTGGTGA 1161 0.4281 MEDSVKDATEQQKKMIVSWDEMIEKALENFGWTQFLQCILVSVVMFFDSQQLFIGIYTDHYPTWHCTNHTTTCTSNSDICKLQKSSWEWDGPSSKTIISQFGLECVSSFITGLPQSSFFFGCLLGSFLLATMADTYLGRKNIIVLSCLSMSVISIVIIFSTNVWIYSALKFLIGFCRSCISTCCLVLLTEKVSTKWRFTVAIIQFVFFTSGYMFLPGVAYANRNSPWKYLYVWTSVPAIFYSFIAYLCVTESPRWLLMQGRVKEAMEMLKGVNENAANLNPAEEPLAEEKKVSFCELYSSIVVLLRRSWARKRMVGVMGLGLGIGMVYYGMPLAVGNLNYNIYIAVVLNALMEIPSCVVTYFLRNCERKLSILVFSVGSGICCIVW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00054 386 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 31 383 - -
Vimu5g00054 386 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 386 IPR020846 GO:0022857
Vimu5g00054 386 Pfam Sugar (and other) transporter 75 385 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g00054 386 SUPERFAMILY MFS general substrate transporter 96 385 IPR036259 -
Vimu5g00054 386 Gene3D MFS general substrate transporter like domains 24 386 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00054 Vimu-Chr5 463340 464500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00054 9 385 Organic Solute Cotransporters AT1G79360 43.077 1.10e-115 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00054 - - vun:114169041 575.474