Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00053 ATGGAGGATTCAGTTTCAGTTTTGACAACCTCTGATTCTGTTGTGCAGGAAAACAATATTCAGTATTCCGAGGAAATGGTAGAAAATGATCCCACAACATGCACATCAAATTCCGACATCTGCAAGCTTCCAAAGTCATCATGGACATGGGATGGACCCTCTTCTAAGACAATCGTATCACAGTTTGACCTTGAATGCGCCAGCAGCTTCATTACAAGTTTATCCCAATCCTCCTTCTTCCTAGGTTGCCTTCTTGGTTCCTTTGTTCTTACCATCCTGGCTGACACATCTCTAGGAAGAAAGAACCTCCTTGTTCTCTCCTGTTTCTTTATGTCCTTAGCTTCTGCTACCACTGTCTTCTCAACCAATGTTTGGACCTACTCCTGTTTTAAGTTCCTCATTGGCTTTTGGCGTTCTTCCATTGCAACGTGTGTTCTGGTGTTACTGACGGAGAAAGTGAGCACAGAGTGGAGGTTTACTGTAGGTGTTGTTGAATATTTCTTCTTCACTTTTGGGTGTATGACCTTGCCTGGAATAGCTTACTTGAACAGAAATTCCTCATGA 564 0.4273 MEDSVSVLTTSDSVVQENNIQYSEEMVENDPTTCTSNSDICKLPKSSWTWDGPSSKTIVSQFDLECASSFITSLSQSSFFLGCLLGSFVLTILADTSLGRKNLLVLSCFFMSLASATTVFSTNVWTYSCFKFLIGFWRSSIATCVLVLLTEKVSTEWRFTVGVVEYFFFTFGCMTLPGIAYLNRNSS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00053 187 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 187 IPR020846 GO:0022857
Vimu5g00053 187 Gene3D MFS general substrate transporter like domains 18 187 IPR036259 -
Vimu5g00053 187 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 42 184 - -
Vimu5g00053 187 Pfam Sugar (and other) transporter 36 176 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g00053 187 SUPERFAMILY MFS general substrate transporter 58 181 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00053 Vimu-Chr5 456998 457687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00053 36 187 Organic Solute Cotransporters AT1G79360 50.000 1.34e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00053 - - ccaj:109788730 269.24