Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00019 ATGCAACTTTTTGGATCGATTATGATTTTGACTTTGGTTTTGGTTTCGTTTGTAGACCTTCGTATCAATTTTTTGGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAATTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGATAGACTCATGCATCATTTGTTTGAAGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGCGAATCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCAAAGGCTGGTCTGATAGACCCTCAGCTTTTTCGCCTCGACCTGGAGACTATGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAAGAGGAGAAGTACCCCGCCCTGCTGCACCTGATCATGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTAGAGTTTCTCAATGTCTTGTTGAATATTTGA 561 0.4563 MQLFGSIMILTLVLVSFVDLRINFLVGGDSMESQFEELAQSPDIIIATPDRLMHHLFEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGANRQTLLFSATLPSALAEFAKAGLIDPQLFRLDLETMISPDLKLAFFTLRQEEKYPALLHLIMEHIGSDEQTLIFVSTKHHVEFLNVLLNI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00019 186 SMART ultradead3 1 147 IPR014001 -
Vimu5g00019 186 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 125 IPR014001 -
Vimu5g00019 186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 184 IPR027417 -
Vimu5g00019 186 Gene3D - 5 133 IPR027417 -
Vimu5g00019 186 Pfam DEAD/DEAH box helicase 16 112 IPR011545 GO:0003676|GO:0005524
Vimu5g00019 186 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 15 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00019 Vimu-Chr5 177204 178216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00019 19 181 Eukaryotic Initiation Factors Gene Family AT3G19760 23.171 1.59e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00019 K14808 - gmx:100817417 296.975