Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00001 ATGGCACCAGAATACACAATTAGTGGGTTGTTCTTTATCAAATCTGATGTATACAGCTTTGGAGTATTGCTACTAGAGATAGCTTGGAGATTATGGAAAGAGGACACTCCTATGAAATTAGTAGATGCTTCTTTGGGTGACTCCTTTAACATATCTGAAGCATTACGCTGCATTCATGTTGGTCTACTATGTGTGCAGCTACATCCAGATAACAGGCCACATATGGCATATGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCGAGAACCTAAGGAACCTGGTTTTCTTGTTGCAAGGATGAAAACTGCTGGCGAATGTTAA 324 0.3889 MAPEYTISGLFFIKSDVYSFGVLLLEIAWRLWKEDTPMKLVDASLGDSFNISEALRCIHVGLLCVQLHPDNRPHMAYVIFMLSGENILREPKEPGFLVARMKTAGEC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vimu5g00001 107 Pfam Protein tyrosine and serine/threonine kinase 1 30 IPR001245 GO:0004672|GO:0006468
Vimu5g00001 107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 98 - -
Vimu5g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 1 91 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00001 Vimu-Chr5 3803 4266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00001 1 106 Receptor kinase-like Gene Family AT4G23280 41.860 1.31e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00001 PK_Tyr_Ser-Thr 6.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00001 - - vra:106753117 194.512