Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02351 ATGGAAGATCGGCGGAGAAAGCACGGCGGAGGGTCGTCGAAGAGGGAATCTAAGCATTTTCTGAAGGTCATACTTCCCTCTGCTATTCATGCTGACCAAATGAGAATTCCTGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATATGGTAAAGATGTTTTCTTTGGCAGCACATGGCGAGAGTTTGTAAACTACTATTCTATAGGGTATGGTTCCCACCTAATTTTCAGATATGTAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCTCCAAACTCGGGGCACTAATAAACCAAATTGGAAGAGGTCCAAGTTTGAGAATGAGCAGCACCACGGCCATGAAACAAAAAAGAAAACGCGTATAGTTGGGAATGGGGTAGAAACTAAGGATGAAGATGATGTGAATTTAATACGTCCAAGTGAGACTAAAGGAAGGAAGAAAAAACGTGATTTTTCTCATGGGAAACAAGTCAAAAGTGGAGGCAGAGGAAATCACTCTTTTTGGGAGATAGGAAAGGATGTTGCTACTGCTAGTGATAGACTGATGCCAAGAAACCCTTCTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAACTGAATTTGCTTGCAAGTATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATAGTAATGGAGAGCAGTGGGATGTTTCTTGCTCATGTCATAGCCGTTGCAGAGCATTGATAATATCGAGGGGATGGAAAAAATTTATGAGGGACAACGATCTATCAGAAGGAGATCAATGTCTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATGTACTGTGCCTGGCGAAGCTTAA 927 0.4088 MEDRRRKHGGGSSKRESKHFLKVILPSAIHADQMRIPEEFIKRFGDELSTVATITVPDGRVWKMRLKKYGKDVFFGSTWREFVNYYSIGYGSHLIFRYVGNSKFRVLIFDITAAEICYPLQTRGTNKPNWKRSKFENEQHHGHETKKKTRIVGNGVETKDEDDVNLIRPSETKGRKKKRDFSHGKQVKSGGRGNHSFWEIGKDVATASDRLMPRNPSVTCTIKSSRLYVSTEFACKYLKPGVGMMLQNSNGEQWDVSCSCHSRCRALIISRGWKKFMRDNDLSEGDQCLLELIKRDPIVLKCTVPGEA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02351 308 CDD B3_DNA 18 110 IPR003340 GO:0003677
Vimu4g02351 308 ProSiteProfiles B3 DNA-binding domain profile. 212 308 IPR003340 GO:0003677
Vimu4g02351 308 Gene3D - 11 113 IPR015300 -
Vimu4g02351 308 PANTHER B3 DOMAIN-CONTAINING 13 295 - -
Vimu4g02351 308 MobiDBLite consensus disorder prediction 169 192 - -
Vimu4g02351 308 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Vimu4g02351 308 Pfam B3 DNA binding domain 222 296 IPR003340 GO:0003677
Vimu4g02351 308 SMART B3_2 20 112 IPR003340 GO:0003677
Vimu4g02351 308 SMART B3_2 219 305 IPR003340 GO:0003677
Vimu4g02351 308 CDD B3_DNA 221 296 IPR003340 GO:0003677
Vimu4g02351 308 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vimu4g02351 308 Gene3D - 201 305 IPR015300 -
Vimu4g02351 308 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Vimu4g02351 308 SUPERFAMILY DNA-binding pseudobarrel domain 219 296 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02351 Vimu-Chr4 25203706 25205214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02351 20 304 B3 DNA Binding Superfamily AT3G18990 30.746 9.52e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu4g02351 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02351 - - vun:114183160 538.495