Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02349 GAAGAGTTGAAGAATATGGGGAGGGGAAAGATTGAAATCAAAAGGATTGAGAACACCACAAATCGGCAGGTAACGTTCTGCAAGAGAAGAAACGGGCTTTTGAAGAAAGCTTATGAGTTATCAGTGCTGTGCGATGCAGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGGAGACTCTATGAGTATTCAAACAACAACATAAGATCAACAATTGAGAGATACAAAAAGGCATGTTCAGATCATTCGAGTACCAGCACTACCACTGAAATCAATGCTCAGTATTATCAGCAAGAATCCGCAAAGCTGAGACAGCAAATACAGATGCTGCAAAATTCAAACAGGCACTTGATGGGTGATGCTTTAAGCACACTGACTGTGAAGGAACTTAAGCAATTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCAGAAATCGAATACTTTCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGTCTTCGGACTAAGATAACTGACGTTGAGAGGATTCAGCAAGTAAACATGGTTTCTGGACCAGAGCTGAATGCTATTCAGGCATTAGCTTCTCGTAACTTCTTCAATCCAAACATGATGGAGGGTGGATCTGTTTACCCTCAGTCAGATAAGAAGATTCTTCATCTTGGGTATGCTCCTATTATTATTTTCTATATTTCATATGCATCATTACTCCATAATCATTATACTTGA 744 0.3938 EELKNMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQALASRNFFNPNMMEGGSVYPQSDKKILHLGYAPIIIFYISYASLLHNHYT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02349 247 Coils Coil 129 149 - -
Vimu4g02349 247 Gene3D - 18 115 IPR036879 GO:0003677|GO:0046983
Vimu4g02349 247 Pfam K-box region 89 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu4g02349 247 CDD MADS_MEF2_like 7 81 IPR033896 GO:0000977|GO:0045944
Vimu4g02349 247 ProSitePatterns MADS-box domain signature. 8 62 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 Coils Coil 92 112 - -
Vimu4g02349 247 FunFam agamous-like MADS-box protein AGL11 18 101 - -
Vimu4g02349 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 174 - -
Vimu4g02349 247 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu4g02349 247 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Vimu4g02349 247 SUPERFAMILY SRF-like 7 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02349 Vimu-Chr4 25181555 25186018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02349 6 227 MADS-box Gene Family AT4G09960 76.087 4.61e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu4g02349 K-box 8.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02349 K09264 - gmx:100301905 430.254