Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02324 ATGAGAAAATATTTTGATGGGTTTCAGAGATTTATTTTTGTGACAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTGGGGGAGAGTTGGGCATCTGTGATGATGATCATGCTATTCAGGAACCATATGAAGGCATGGAGTTTGAATCTGAAGATGCTGCTAAGATATTCTACGACGAATATGCACGACGTGTAGGATTTGTCATGCGTGTGATGTCATGCAGACGCTCAGAAAGGGATGGAAGGATTCTTGCCCGCAGGCTTGGGTGCAACAAAGAGGGTTATTGTGTCAGCATCCGAGGGAAATTTTCATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGGTGTAAGGCAATGATTCACATCAAATATGAGAAATCTGGAAAATGGGTGATAACAAAATTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCTCGTGAAGCACGCCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAAAAACGGTTGTGTGCAACATATCAAGAACAACTTACTTCCTTTATGAAGGTTGTTGAAGAGCACAATGAAAAGCTATCTACGAAAATCCATCTTGTAGTTAATAATCTCAAAGAATTTGAATCCATAGACGAGATTTTGCACCAAACATAG 675 0.4059 MRKYFDGFQRFIFVTVDPNEGCRVLESSSGGELGICDDDHAIQEPYEGMEFESEDAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYEKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRHKKRLCATYQEQLTSFMKVVEEHNEKLSTKIHLVVNNLKEFESIDEILHQT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02324 224 Pfam FAR1 DNA-binding domain 60 148 IPR004330 -
Vimu4g02324 224 Coils Coil 158 185 - -
Vimu4g02324 224 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 37 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02324 Vimu-Chr4 25042950 25043826 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu4g02324 FAR1 3.4e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02324 - - pvu:PHAVU_005G002900g 422.165