Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02318 ATGGATACCTCTGGTAGTACATGTGAGATAGTGGAATCAAGGGAAGAAATAATATCTGAGATTAAAATGGTTGACAAACCTGAGAGTAGTTGTGCTCACAAATCAGGGAAAAGGTATTCCATTGAGAATGATATTAATCAGCTTTTCCAGGCTATTGATATTAAAAGTTCATCAAGAGGTCACAGTTCATCACGGTTACAAAAGAATGCTCTTAAAAGGCCAATAAAAGTCAGTTCATCTCAGGCATCAGGAATTGGCATTTCAGAGCCTGTAAGTTTGAAGCAGGCACTTAGAGGGTTGTGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAAAGATTGTCTAAGCCATGCAGTTCATCTAGAGCATCAGAGGCTGGCACCATCAAAAGGTTGTACACAGCAGTGGTAGATGAGGGGAAAGGGAACTTGGTAGAAATTTCTCTAGTGCCAGAGATATCTACTGCACCTTCTAATAAATTGCCCGGTGTAACTATATCAAGTTCAATTGATCATTGTACTAGTCCTTTGGTTGATGCTACAAAACCAAAAGAAATGATGATTGGATTTTCATCCCAAGATCAGATTGTTCCTCTGCCTTTAGAGGTTGAGGGTTACAAACCAGTCGTGGACATTGGAACACCAATACTTGCAAATTTGTCACCAGTTGCCTGTGCTAGTGATGTGGTGCCAGAGGTTCTAAGGGATCCTGTTTCCTTAAGCAAAGCTTCTCTTAGTTCTTCAATGCCAGGTAAGGGGCAGGAAGCAAATTTACTTCCTGCATCTTGTCCACCTAGCTCTAGCGCTGGCAATGGTGGGGATAAATCTACAAGCAGTAGTACATGTTTGTCAAAGCCAATATTCAATAACTTGAATTTCCTTAAGAAAAAGGTAAAGCAGGATTTTAGTTCTTCCTCAAGCTGCTCCACTCCATGTACAAGTAATTTGGACAAGGAGGTTGAAAATTCTGATTTGAAGCACGGAGTGAAAGAAAATGAGAAATTGTCTCCAAGCTGTTCAAATCATAGCATTGAAGTTAACTCCATTAGTGTTGGTACGGATTCAAGCAAACCTGGTTTCAGCTTGAAATGCAACAAGAGAACTAAGTTTCTGGTGACAAAAGTTGATGAGAAATCAAGATCAAAGGAAAAAGGCGAGTTCTCTCAAAGTTCAAAAAGTAGCATTGGTGAGTATAGTAGTAGCACAAGCATCAGTGAGGAAAGCAGTCTAAGTGGTTCCAGCCGTGGTGGCCACAGACCTCACATGTCAAAACACATGAGATGGGAAGTTATCCGAGTTGTTCAGCAGCAACAAGGTAATTTAAATTTGAAGCACTTTAAGCTGCTAAAGAGGCTTGGTAGTGGGGACATTGGAACTGTTTACCTTGCGGAACTAATTGGTACAAGCTTCCTTTTTGCGCTCAAAGTGATGGACAATGAATTTTTGTCGAGTCGGAAGAAAATGTTCAGGGCCCAAACTGAGAAAGAGATCCTTCAGATGCTGGACCATCCATTTCTTCCCACTCTGTACTCCTATATTGCAACAGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGAGGAGATCTGCATGTGCTGCGACAGAGGCAGTCATACAAGAGTTTCTCAGAACAAGCAACTAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTGCATATGCTGGGAGTTGTGTATCGAGACCTAAAGCCGGAAAATATCCTAGTACGAGAAGATGGTCATATTATGCTGACAGATTTTGATTTGTCACTCAGGTGTTCCGTCAATCCAATGTTAGTCAAGTCATCTTCACCTGACACAGATGCCACGAAGAAGACCTGTTCTGAAGCTAGCTGCATACACCCTTTCTGTCTCCAACCAGATTGGCAAGTTTCGTGCTTTACTCCCATTCTCTTATCTACTGGAGCAAAATCCCGAAAGATGAAGTCTGACATAACTTCTCATGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAGGGTGAGGGTCATGGAAGTGCAGTTGACTGGTGGACTTTTGGTATACTTTTGTTTGAGCTTTTATATGGTAAGACTCCATTCAAGGGCCAATCAAATGAGGACACATTAGCCAATGTTGTGTCACAATGCCTAAAGTTCCCTGGTGCTCCAATAGTCAGTTTTCATGCCAGAGACTTGATCAGAGGGTTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCACCCATTTTTTGAAGGTCTCAATTGGGCTCTAATACGGTGTGCGGCACCACCAGAGCTCCCCAAGTTTCGGGATTTTGGAACAAGTGCTCCATATATGGCTGCAAATAAGGAGAATGCAAATGATTTAGAGGATATAAAAGATTGTGAAGAGTTTGAGCTGTTTTAG 2487 0.421 MDTSGSTCEIVESREEIISEIKMVDKPESSCAHKSGKRYSIENDINQLFQAIDIKSSSRGHSSSRLQKNALKRPIKVSSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRASEAGTIKRLYTAVVDEGKGNLVEISLVPEISTAPSNKLPGVTISSSIDHCTSPLVDATKPKEMMIGFSSQDQIVPLPLEVEGYKPVVDIGTPILANLSPVACASDVVPEVLRDPVSLSKASLSSSMPGKGQEANLLPASCPPSSSAGNGGDKSTSSSTCLSKPIFNNLNFLKKKVKQDFSSSSSCSTPCTSNLDKEVENSDLKHGVKENEKLSPSCSNHSIEVNSISVGTDSSKPGFSLKCNKRTKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESSLSGSSRGGHRPHMSKHMRWEVIRVVQQQQGNLNLKHFKLLKRLGSGDIGTVYLAELIGTSFLFALKVMDNEFLSSRKKMFRAQTEKEILQMLDHPFLPTLYSYIATDKLSCLVMEYCPGGDLHVLRQRQSYKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKTCSEASCIHPFCLQPDWQVSCFTPILLSTGAKSRKMKSDITSHVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILLFELLYGKTPFKGQSNEDTLANVVSQCLKFPGAPIVSFHARDLIRGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGTSAPYMAANKENANDLEDIKDCEEFELF 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02318 828 Gene3D Transferase(Phosphotransferase) domain 1 530 598 - -
Vimu4g02318 828 SUPERFAMILY Protein kinase-like (PK-like) 420 796 IPR011009 -
Vimu4g02318 828 PANTHER FLIPPASE KINASE 1-RELATED 317 796 - -
Vimu4g02318 828 MobiDBLite consensus disorder prediction 243 278 - -
Vimu4g02318 828 Pfam Protein kinase domain 447 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02318 828 Pfam Protein kinase domain 674 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02318 828 MobiDBLite consensus disorder prediction 319 333 - -
Vimu4g02318 828 Gene3D Phosphorylase Kinase; domain 1 444 529 - -
Vimu4g02318 828 FunFam Serine/threonine-protein kinase D6PK-like 444 529 - -
Vimu4g02318 828 Gene3D Transferase(Phosphotransferase) domain 1 672 795 - -
Vimu4g02318 828 ProSiteProfiles Protein kinase domain profile. 446 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02318 828 MobiDBLite consensus disorder prediction 304 318 - -
Vimu4g02318 828 MobiDBLite consensus disorder prediction 260 278 - -
Vimu4g02318 828 MobiDBLite consensus disorder prediction 381 422 - -
Vimu4g02318 828 CDD STKc_phototropin_like 444 800 - -
Vimu4g02318 828 MobiDBLite consensus disorder prediction 388 416 - -
Vimu4g02318 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vimu4g02318 828 SMART serkin_6 446 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02318 828 FunFam serine/threonine-protein kinase D6PK-like 672 795 - -
Vimu4g02318 828 FunFam serine/threonine-protein kinase D6PK-like 530 597 - -
Vimu4g02318 828 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02318 Vimu-Chr4 25018289 25021362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02318 312 828 AGC Kinase Gene Family AT3G52890 61.351 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu4g02318 Pkinase 1.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02318 - - gmx:100789339 1353.58