Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02312 ATGCGCTTGGATTGGTCATTGGGTCTTGCCGGTGAGTTTGATGGACTGTGTGGGTGGTGTGCCAGTGATTTAAATTTTGTGCCCTGGTCTGTCTTGCTTGTGAATTTGATGGATTGTGATGTTGAGATTGAAATTCTGGGATTTGATGGTTGGTGTTGTGAACTCAATTTGGTGGCATGTAATGGTATTGTATTTTGTGCTCAATTTGATGGGTTAGCATATGTTGGCCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAATGCCCATCTGGTCGATCAGCAACATTTTTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGCCTGAGGATTGCTTTTCCTCAAGCATATCTAGTCTTGTACTCCAATTGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCAGTACCAATATGTCATTATGAAGATACTCAATCAGCAAAAGCTTCAAGGCAACAGCTTAAAGAGGCAATCTACGCATCTTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTATTGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTCGTGGGGCTGGGAGCACTGAAGCTTACAGGATTTCTCAGGGAGAAAATGCAGTTGAACAACTTAACTTTTCAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGTTGTTTGGTAATTTTTTATTTGCATGGAAACAGAAGCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATCAAAGGATACAAACGCATCATATGAGGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACACCAGAGGTCTTATTCAAGCCTCATTTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCAATAGCTCTTTGTGTGGAACATTGCCATTTTGCAGATTTACCAGGTGACAATGATTGGTACAAGACTATAGTTTTATCAGGGGGAACTGCATGTCTACCTGGTTTGGCTGAAAGGGTAGAGAAAGAACTCCATACCTTACTTCCTCCCTACATGTTCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACGCCATGGTTTGGAGCTAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGTGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAGCCTCATATGGTGA 1389 0.419 MRLDWSLGLAGEFDGLCGWCASDLNFVPWSVLLVNLMDCDVEIEILGFDGWCCELNLVACNGIVFCAQFDGLAYVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNSLRIAFPQAYLVLYSNWMQVKPNKQPVIVSVPICHYEDTQSAKASRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRTLKEKLFGNFLFAWKQKLCYVALDYEAELSKDTNASYEAAGEGWFTLSKERFQTPEVLFKPHFAGVQAMGLHQAIALCVEHCHFADLPGDNDWYKTIVLSGGTACLPGLAERVEKELHTLLPPYMFNGIRVIPPPYGADTPWFGAKIIGNLSTFPGHWCVTKKQFRQKPRLSLIW 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02312 462 CDD NBD_sugar-kinase_HSP70_actin 97 257 - -
Vimu4g02312 462 Gene3D - 97 454 - -
Vimu4g02312 462 Pfam Actin 163 453 IPR004000 -
Vimu4g02312 462 SUPERFAMILY Actin-like ATPase domain 96 232 IPR043129 -
Vimu4g02312 462 PANTHER ACTIN 160 454 IPR004000 -
Vimu4g02312 462 SMART actin_3 94 452 IPR004000 -
Vimu4g02312 462 Gene3D - 217 427 - -
Vimu4g02312 462 Gene3D Actin; Chain A, domain 4 260 355 - -
Vimu4g02312 462 SUPERFAMILY Actin-like ATPase domain 226 453 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02312 Vimu-Chr4 24972912 24979324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02312 160 458 Cytoskeleton Gene Families AT3G12110 31.250 5.92e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02312 K16616 - gmx:100791973 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02312 4 24972912 24979324 Vimu4g02312 4 24972912 24979324 ECH