Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02309 ATGGCAGCCTCAGCTTCATCCATGATATCAACTTCTGCAGCCTTATCTGCCACCATCCAAAAGCACCATCTTGTGAAGCCCTCCAACGTGTGCTTTCAGGGTCTGAGACCTCTCACAAGGTCCACAGCCTCAGCCAGAGTGAGCACATCCAAAAGGGTCCCTCGTGGTAATGGTGTTGTGAAGGCTGAACTCAACTCAGCCCTTGGGAGATTTGTGTTCTTCAACTTCCAAAGGGAGAACGTGGCAAAGCAAGTTCCTGAGCAGAACGGGCTCACACACTTCGAGGCTGGTGACACACGTGCCAAGGAGTATGTCAGTCTCCTCAAATCCAATGACCCTGTTGGATTCAACATAGTTGATGTCTTGGCTTGGGGTTCCATTGGTCATGTTGTTGCTTACTACATCTTGGCCACCACTAGCAATGGCTATAACCCTGCATTCTTTTAA 447 0.4944 MAASASSMISTSAALSATIQKHHLVKPSNVCFQGLRPLTRSTASARVSTSKRVPRGNGVVKAELNSALGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHVVAYYILATTSNGYNPAFF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02309 148 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 23 148 IPR016370 -
Vimu4g02309 148 NCBIfam photosystem I reaction center subunit V 67 144 IPR017494 GO:0009522|GO:0009535|GO:0015979
Vimu4g02309 148 Gene3D - 58 148 IPR023618 GO:0009522|GO:0015979
Vimu4g02309 148 PIRSF PsaK 1 148 IPR016370 -
Vimu4g02309 148 Pfam Photosystem I psaG / psaK 67 143 IPR000549 GO:0009522|GO:0015979|GO:0016020
Vimu4g02309 148 ProSitePatterns Photosystem I psaG and psaK proteins signature. 115 132 IPR000549 GO:0009522|GO:0015979|GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02309 K08905 - gmx:100499718 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02309 4 24964537 24965019 Vimu4g02309 4 24964537 24965019 ECH