Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02307 ATGTGGTTGTCTGTTACTCCAGTTCAGGGATATGATGCTGTGCTTTCTGGAACAATTGATGTGAAATTTGATGGTGGATACGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTGAAAGGTGTCCTGTTTCATGTTCCTGATAACATGTCCCAGAGTTCTCATACCGAAGGCAATACCAGTTCACAGAATCATGGTGAAGGCACATCTGGGTCACAGAGTCGAAAGAGAGCAAAATATACACCACGTGATCCGTTCCGGCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCACGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTACAAAAGCACTCCCTTTTGAATTGA 426 0.4484 MWLSVTPVQGYDAVLSGTIDVKFDGGYVVTVTVGSEELKGVLFHVPDNMSQSSHTEGNTSSQNHGEGTSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVQKHSLLN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02307 141 Gene3D High mobility group box domain 70 138 IPR036910 -
Vimu4g02307 141 MobiDBLite consensus disorder prediction 46 75 - -
Vimu4g02307 141 MobiDBLite consensus disorder prediction 45 91 - -
Vimu4g02307 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 134 - -
Vimu4g02307 141 SUPERFAMILY HMG-box 73 134 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02307 Vimu-Chr4 24954749 24957311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02307 7 134 ARID Transcription Factor Family AT3G13350 52.344 1.62e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02307 - - gmx:100793029 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02307 4 24954749 24957311 Vimu4g02307 4 24954749 24957311 ECH