Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02297 ATGTCGGAGAGCGATCAGCGCCGTCTTCTGGGGCTGTCGGAGGATGACGTGGAAGCTCGAGGGTCGGAGTTGGCCGTCGTCAATGGCGGCGGCGGCATCAACAGCAACAACAAAGGTTTGAGGGATTTGTTAAGGTTGTCGGGTCACCGACAGAGTTTCAAGCGCATTGAGAAGGAAGAAGATAGAGACAGAGACAGGGATAGAGATAGAAGGGAACAAAATCGGCATCATCACGATGTGGATCTTGATTCTTCTGTTGAGGTGCTTGGCGACAGTGCACCTCCTGAATGGGCGTTGCTACTCATCGGTTGCCTCATTGGACTCACAACTGGCCTCTTTGTTGCCTTTTTCAATAAAGGGGTGCATATAATACATGAATGGGTATGGGCTGGTACTCCAATTGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTCGGAATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACTGCCTCTCAAACACAAGGTTTTGATTTTCTTGCAGGAATCTTTCCGACAATAAAGGCTATTCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGGCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAACGGATTCTCACTAATGATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCAGCTGGTGCCGCGGCTGGAATTTCGTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTCCGAGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCATCAACTGTATCAAATGTTTTACAGGGGATCAAATCAGCTTTTACAATTCCCGAGTATGATTTGAAATCTGCCGCTGAGCTACCTCTATACCTGATATTGGGAATGCTTTGTGGTGTTATAAGTGTGGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTGTTTAAGTTTATTCAGGATAAGTTTGGCATTCCTACTGTGGTTTGCCCTGCTTTAGGTGGTTTCGGAGCTGGGATTATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTTTACGTACTGGGAAGAGCGCTTCAGCTCCTGGAATATGGCTTCTAACTCAATTGGTAGTTTCTAAGGTCATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTTGGTGGTCTTTATGCACCAAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTCTTTGGAGGCTTTTCCGCTGAAGTTATTAATTCAGCAATTCCTGGAAATGCTGCTGTTGCTCAGCCCCCGGCATATGCTCTGGTTGGAATGGCGGCCACATTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTGTTACTTCTGTTCGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCTTCAGTGACAAACCAGGCGAAGGAGAGTGATACACCCGATGCAAGTAGCTCATTAAGAGGATATTCTCCAGTTTCACATGCTGGAGATGATAATGAGGGTAACTGGAGACAAGTCAATGATGGGAATGATTTAGAGCTCCATATTGTTGGGGATGGCGCTGATCTTGAAACAACTGACAAGGAACTTCTTCTGGACACTCTTCAGGTTTCTCAAGCAATGTCAAAACAATATTGTAAAGTTTTGTCATCTGCAATCTTGAAAGATGCAATAAAATTGATGCATGACAGCCAGCAGAATTGTGTGCTGGTAGTTGATAAAGAAGATTTTCTGGAAGGAATATTAACATATGGTGACATAAGAAGGTGTCTGTCTCAGGAGTCTCATGACACTTTGAAGAGTGGTATAGTGGTTGTGGATTCAAACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGCTCGAGGAATTTTGACTTGCTATCCAAATACTAGCTTGGCTATGGCCAAAGAGTTGATGGAAGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGTGGTGGTGATCAGAGTAGAGAAAGAAAAAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATTAATCACAGGCAAACAGCCTATCAAAATATGACAGATAACAGTTTGGCAGTGACAACAACAAATGGTCATTAA 2280 0.4425 MSESDQRRLLGLSEDDVEARGSELAVVNGGGGINSNNKGLRDLLRLSGHRQSFKRIEKEEDRDRDRDRDRREQNRHHHDVDLDSSVEVLGDSAPPEWALLLIGCLIGLTTGLFVAFFNKGVHIIHEWVWAGTPIEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTASQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIKSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMTRLVAWFTKLFKFIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLVVSKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQAKESDTPDASSSLRGYSPVSHAGDDNEGNWRQVNDGNDLELHIVGDGADLETTDKELLLDTLQVSQAMSKQYCKVLSSAILKDAIKLMHDSQQNCVLVVDKEDFLEGILTYGDIRRCLSQESHDTLKSGIVVVDSNTCLVSSVCTRGMSYRGRARGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDQSRERKRRIVGLLHYDALWQCLRKEINHRQTAYQNMTDNSLAVTTTNGH 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02297 759 MobiDBLite consensus disorder prediction 522 552 - -
Vimu4g02297 759 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu4g02297 759 PRINTS Chloride channel signature 467 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu4g02297 759 PRINTS Chloride channel signature 249 268 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu4g02297 759 PRINTS Chloride channel signature 426 446 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu4g02297 759 PRINTS Chloride channel signature 485 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu4g02297 759 ProSiteProfiles CBS domain profile. 589 646 IPR000644 -
Vimu4g02297 759 FunFam Chloride channel protein 570 729 - -
Vimu4g02297 759 CDD Voltage_gated_ClC 110 512 - -
Vimu4g02297 759 SUPERFAMILY Clc chloride channel 95 519 IPR014743 -
Vimu4g02297 759 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 16 744 - -
Vimu4g02297 759 FunFam Chloride channel protein 87 531 - -
Vimu4g02297 759 Gene3D - 570 732 IPR046342 -
Vimu4g02297 759 SUPERFAMILY CBS-domain pair 583 737 IPR046342 -
Vimu4g02297 759 MobiDBLite consensus disorder prediction 522 538 - -
Vimu4g02297 759 Pfam Voltage gated chloride channel 190 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu4g02297 759 CDD CBS_pair_voltage-gated_CLC_euk_bac 589 729 - -
Vimu4g02297 759 Gene3D Clc chloride channel 84 528 - -
Vimu4g02297 759 Pfam CBS domain 585 639 IPR000644 -
Vimu4g02297 759 Pfam CBS domain 677 724 IPR000644 -
Vimu4g02297 759 SMART cbs_1 592 640 IPR000644 -
Vimu4g02297 759 SMART cbs_1 677 733 IPR000644 -
Vimu4g02297 759 ProSiteProfiles CBS domain profile. 669 741 IPR000644 -
Vimu4g02297 759 MobiDBLite consensus disorder prediction 55 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02297 Vimu-Chr4 24888677 24899548 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02297 K03281 - gmx:100787625 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02297 4 24888677 24899548 Vimu4g02297 4 24888677 24899548 ECH