Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02291 ATGGCTGGGATTGATGATAATGTTGCCCTTTCTGGCGATTGGGGTCTTACTAGCCCAAGTCCAAGAACATTTTTCTCTAGAATGTTGGAGGAAGAAAATGTAACAAGATCAGTCTCAGAGCATTCTGGAAGTGGTAGAACTGGGGAATTCTTTTCAGGACCACATGAGCCTAGTGAGACAGGGAAGCGAAACATGCAGGATGCAGCACAAGATGGAGATTCTGTAGCCCAATTGAGTTTTCAGACCGAGCAAAAGCCTAACTCCAGAGGTGGTCTTGTGGAAAGAATGGCTGCTCGAGCTGGGTTTAATGCTCCTAGGTTGAACACTGAAGGCATTAGATCTACTGATCTTTCACTCAATTCAGACATTCAGTCTCCTTACTTGACCATCCCACCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCTCAGCCATCTCCAACAACTGGAAAGTTTCTGTTTATGTCAAATGGCAACATGCGGCACCCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAATGGCTTTGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAAGCTCCTCTTTCTATCATGGTGCTGGAAGAAAAATAAATCCAACTACATTTCCTCAACAATCCCATCCTGGTATTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCATTCCCAAAGTGTTGATGCTGCCAAAGTTCAAACTGAGAACAAAAATGGTCTTCATCTTCAGGCAGACTTTGCGGAATCGCCTCCTGAAAAGGATATTAAAATGTTTCCAGCTGATCAAAGGGCTTTTGATGCTGTTGGTGGTGGGATTGAACATTCTACACCAGTTGAAGAGCATGGAGATGAAGAAGGAGATCAAAGAGCCAATGGAGATTCAGTGACTGGTGGTGTTGGGGGTGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAACAAGTGAAAGGCAGCGAGTACCCTCGAAGTTACTACAAGTGCACCCATCCAAACTGTCAGGTCAAGAAGAAAGTAGAACGATCCCACGAAGGCCACATAACTGAGATCATCTACAAGGGAACGCACAACCATCCAAAACCTCCTCCTAGTCGCCGATCAGGTATAGGTTCAGTTAACCCTCACACTGACATGCAAGTTGACAACCCTGAACATGTTGAATTACACAATGGTGGTGATGGTGACATGGGCTGGGGTAATGTACAAAAGGGAAATATAGTTGGAGCTGCTAACTGGAAGCACGAAAACCTTGAAGCAACATCATCAGCATCTATTGGCCCTGAGTACTGCAGCCAGTCCAATTTGCAGACGCAAAATGGTGGTACTCTTATTGATTCAGGAGAGGCAGTTGATGCCTCGTCTACTTTCTCTAACGAAGAAGATGAAGATGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCTAAGAGAAGGAAACTGGAATCATATGCAGACCTGAGTGGAGCTACTAGAGCCATTCGTGAGCCTAGAGTTGTTGTACAAACTACCAGTGAGGTAGATATCCTCGATGATGGTTATCGGTGGCGCAAGTATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACAAATGCAGGCTGCACAGTAAGGAAACATGTGGAGAGAGCATCACACGACCTTAAATCTGTGATCACCACTTATGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGCAGCCATGTCAATGCTAACGCGTCAAATGCCAACCAAGCTTCTAGTGTTCTTCATAGCCATGTTCATAGACCAGAACCATCTCAAGTACACAATGGCATGGGAAGGCTTGAGAGGCCGTCCCTCGGCTCGTTCAACCTACCCGGAAGACAGCAGCTAGCACATTCCCATGGTTTCTCCTTTGGCATGAACCAACAGATGCTATCAAATCTGGCGATGTCAGGGTTAGGCCACATGCAAGCCAAGCTCCCTGTCATGCCTGTTCATCCATTCTTGGCACAGCAACAACAGCAAAGTCCTTCAAACGATTTTGGTTTCATGATGCCAAAGGGAGAGCCAAATGTAGAGGCTATTCCTGAACGTGGTGGTGGCCTTAACCTGCCAAATGGCTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCACATGTAA 2241 0.4538 MAGIDDNVALSGDWGLTSPSPRTFFSRMLEEENVTRSVSEHSGSGRTGEFFSGPHEPSETGKRNMQDAAQDGDSVAQLSFQTEQKPNSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNGNMRHPELSSDAPEKCKDNGFDDIYTSSFAFKPATDSSSSFYHGAGRKINPTTFPQQSHPGIEVSAQSENSFHSQSVDAAKVQTENKNGLHLQADFAESPPEKDIKMFPADQRAFDAVGGGIEHSTPVEEHGDEEGDQRANGDSVTGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPSRRSGIGSVNPHTDMQVDNPEHVELHNGGDGDMGWGNVQKGNIVGAANWKHENLEATSSASIGPEYCSQSNLQTQNGGTLIDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYADLSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNANQASSVLHSHVHRPEPSQVHNGMGRLERPSLGSFNLPGRQQLAHSHGFSFGMNQQMLSNLAMSGLGHMQAKLPVMPVHPFLAQQQQQSPSNDFGFMMPKGEPNVEAIPERGGGLNLPNGSSVYQEIMSRMPLGPHM 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02291 746 FunFam WRKY transcription factor 33 522 588 - -
Vimu4g02291 746 SMART WRKY_cls 319 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 SMART WRKY_cls 535 594 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 ProSiteProfiles WRKY domain profile. 530 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 MobiDBLite consensus disorder prediction 1 91 - -
Vimu4g02291 746 MobiDBLite consensus disorder prediction 612 648 - -
Vimu4g02291 746 MobiDBLite consensus disorder prediction 63 88 - -
Vimu4g02291 746 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 615 IPR044810 GO:0003700
Vimu4g02291 746 ProSiteProfiles WRKY domain profile. 320 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 MobiDBLite consensus disorder prediction 285 326 - -
Vimu4g02291 746 Pfam WRKY DNA -binding domain 536 592 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 SUPERFAMILY WRKY DNA-binding domain 527 595 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 MobiDBLite consensus disorder prediction 370 417 - -
Vimu4g02291 746 SUPERFAMILY WRKY DNA-binding domain 318 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 Gene3D WRKY domain 522 588 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 MobiDBLite consensus disorder prediction 468 506 - -
Vimu4g02291 746 Gene3D WRKY domain 310 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g02291 746 FunFam WRKY transcription factor 310 379 - -
Vimu4g02291 746 MobiDBLite consensus disorder prediction 219 240 - -
Vimu4g02291 746 MobiDBLite consensus disorder prediction 291 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02291 Vimu-Chr4 24845450 24849031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02291 1 741 WRKY Transcription Factor Family AT5G56270 49.161 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g02291 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02291 K18835 - gmx:100127395 1284.63