Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02289 ATGAAAAGAGCGAAACCATACCTCAGGAGGAACATGTCGTGGTCACCACGAGAAGAATCACCAACACTATTAATTAGCTCCCTTCTTCTGATTACCTTATTCGTTGCAGTAACAGCAGCAGAAGCAGAATCAGAAGCCTCCGATGCGAATCTCCTCATCCGCTTCAAGCAGTTCCACGTTTCCTCCGACCCCCGCGGCTTCCTCTCCGATTGGCTCCCCGACGCGCCGTCCCCGTGCGCGTGGCGCGGCGTCACCTGCTCGCCACCGCCACGCCGAGTCACCGCCATCGACCTCGCCGGCGCCGCCCTCTCCGGCACCCTCCACCTCCCCACCCTCACTTCCCTCCCCTCGCTAACCACCCTCGTCCTACGTGGCAACTCCTTCTCCGCTTTTAACCTCAGCGTTTCGCCGTTTTGCACGCTTCAAACACTTGACCTCTCTTTCAACAACTTCTCCGGCAAGTTTCCTTTCGCAAACCTAACTCCGTGTACCCGCCTCACTTACTTAAACCTCTCCAATAATCTCATCACCGCTGGACTCGGCCTTGGGCCTGCCTCTGGGCTTTCCCTGGCCCAACTCGACTTGTCCAGAAACCTCGTCTCCGACCTCGGCCTTCTCGTGTCCTCTCTCGCCAGCTCCGCTCTCGTTTATCTGAACTTCTCCGACAACAGACTCGCGGGTCAACTCGGCGAGTCGCTCGTTTCCCGAAGCGCGAACCTCTCCACCTTGGACCTCTCCTACAATCTTCTCTCCGGGGCGGTGCCGCCTCAGCTCGTGAATGACGCCGTTCAGGTTCTCGATTTCTCGTTCAACAACTTCTCGCGGCTCGATTTCTCCTCGTGCGGTAGCCTAACGCGTTTGAGCTTCTCGCGCAATGCGCTCTCCGGAGAAGAGTTTCCGCGCGGGTTGAGCAGCTGCAACAGGCTCGAGGTTCTGGATCTTTCTCGCAATGAGTTTGAAGCCGAGATTCCCGGGGAGATTCTTCGGAATTTGAGGAGCTTGAAGTCTTTGTTTCTCGACCGCAGCAAATTCTCCGGCGAGATTCCGAGCGAGCTCGGAAGCCTCTGCGGAAGTCTCGTGGAGCTTGATCTCTCCGAGAACATGCTTTCTGGTACGTTGCCTTTGAGCTTCGTGAACTGTTCTTCTCTGCGGAGTTTGAACCTCGCGAGGAACTATCTCTCCAGGAACTTCCTTGTGTCCGTGGTTAGCAAGCTTCAGAGTCTCGAGTATCTAAATGCGTCGTTTAATAACATAACGGGACAGGTTCCGTTTTCCCTTGTTAACCTGAAACGACTTCGGGTGCTTGACTTGAGCTCGAACCGGTTAAGCGGCAATGTTCCGTCGTTCTTTTGCCCTTCCGGGCTGGAGAAGTTGATCCTTGCGGGCAATTACCTTTCCGGGACGGTGCCTTCACAGCTCGGTGATTGTAAGAATTTGAGAACCGTTGATTTCAGCTTTAACAGCTTGAACGGTTCAATTCCGTGGGAGATTTGGGCTTTGCCTAACCTCTCTGATTTGATTATGTGGGCGAATAATCTCACTGGGGAAATCCCAGAAGGAATTTGTGTTAAAGGAGGGAACTTGGAGACTTTGATTCTCAACAATAACTTCATTTCTGGGTCAATTCCGAAGTCAATTGCCAATTGCACCAACATGATATGGGTGTCGCTGGCGAGCAACCGGTTAACCGGAGCGATACCTTCTGGGATTGGGAAATTGAACGCATTGGCGATTCTCCAGCTTGGGAACAACTCGCTGAGTGGGAGGATTCCACCTGAGATAGGCAAGTGTGGGAAGTTGATATGGTTAGATTTGAATAGCAATAACCTAACTGGGAATATCCCGTTTGAGCTTGCTGATCAAGCGGGACTGGTTATACCGGGCAAGGTTTCAGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATCAGAACAGAGAGACTTGAAGGTTTTCCCATGGTGCATTCCTGCCCATTGACGCGGATTTACCTCGGTTGGACCGTGTATACTTTTTCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGTTGTCTGGGACTATTCCTGGGAATTTGGGTGGCATGGCCTATTTGCAGGTGTTGAATTTGGGGCACAATAGGCTGAGTGGGAACATTCCGGATAGTTTTGGTGGTTTGAAAGCAATTGGGGTGCTTGATCTGTCACATAACAGTCTTAATGGGTCCATCCCTGGTTCATTGGAGAGCCTTTCTTTTCTCAGTGACCTTGACGTCTCTAATAATAATCTCACCGGGTCCGTTCCTTCTGGAGGTCAGTTGACTACTTTTCCAGCTTCTAGATACGAGAACAACTCTGGCCTTTGTGGCCTGCCGCTGCCATCGTGTAGTGCTTCGAAGAACCGCTCAGTGGGTGTTGGGGTTTGGAAGAAGAAGCAGCCTGTAGCAGCTGGGGTTGTCATTGGTTTGCTTTGCTTCCTCTTGTTTGCGCTTGGGCTTGTGTTGGCTTTGTACAGGGTGAGGAAGGCTCAGAAGAAGGAGGAGATTAGAGAAAAGTATATAGAGAGTCTTCCCACTTCGGGGAGCAGTAGTTGGAAGCTTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACGTTCGCACATCTTCTCGAGGCTACTAATGGTTTCAGTGCTGAGAGTTTGATCGGCTCTGGGGGATTTGGTGAAGTGTACAAGGCTAAGCTCAAAGATGGCTGTGTTGTTGCCATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAAGTTGGGGAGGAGAGACTTCTTGTGTACGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTTTACATGAAAGAGCAAAAGGAGGAGGTTCAAATCTTGATTGGGGTGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATTCCTCACATTATACACAGGGACATGAAGTCCAGCAACATTCTTCTTGATGAAAATTTTGAGGCTAGAGTTTCTGATTTTGGCATGGCAAGATTGGTCAATGCCCTCGATACTCATCTAACTGTCAGCACACTTGCCGGAACACCGGGTTATGTACCTCCTGAGTACTACCAGAGTTTCCGATGTACAGCTAAAGGGGATGTCTATAGCTATGGTGTCATACTGCTTGAGCTTCTATCAGGTAGAAGGCCAATCGACTCTTCCGAGTTTGGTGATGACAACAATCTTGTTGGTTGGTCTAAGAAGCTTTACAAAGAGAAGAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAATCATCTAGTGAAAGTGAACTATTTCAGTATTTGAGAATTGCCTTTGAGTGTCTAGAAGAGAGGCCCTACCGTCGGCCGACCATGATACAAGTGATGGCCATGTTCAAAGAGCTTCAGGTTGACACAGATAATGATACGCTTGATAGCTTCTCTCTGAGAGACAGTTGCATTGATGAAGCATGA 3630 0.4989 MKRAKPYLRRNMSWSPREESPTLLISSLLLITLFVAVTAAEAESEASDANLLIRFKQFHVSSDPRGFLSDWLPDAPSPCAWRGVTCSPPPRRVTAIDLAGAALSGTLHLPTLTSLPSLTTLVLRGNSFSAFNLSVSPFCTLQTLDLSFNNFSGKFPFANLTPCTRLTYLNLSNNLITAGLGLGPASGLSLAQLDLSRNLVSDLGLLVSSLASSALVYLNFSDNRLAGQLGESLVSRSANLSTLDLSYNLLSGAVPPQLVNDAVQVLDFSFNNFSRLDFSSCGSLTRLSFSRNALSGEEFPRGLSSCNRLEVLDLSRNEFEAEIPGEILRNLRSLKSLFLDRSKFSGEIPSELGSLCGSLVELDLSENMLSGTLPLSFVNCSSLRSLNLARNYLSRNFLVSVVSKLQSLEYLNASFNNITGQVPFSLVNLKRLRVLDLSSNRLSGNVPSFFCPSGLEKLILAGNYLSGTVPSQLGDCKNLRTVDFSFNSLNGSIPWEIWALPNLSDLIMWANNLTGEIPEGICVKGGNLETLILNNNFISGSIPKSIANCTNMIWVSLASNRLTGAIPSGIGKLNALAILQLGNNSLSGRIPPEIGKCGKLIWLDLNSNNLTGNIPFELADQAGLVIPGKVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYLGWTVYTFSSNGSMIYLDLSYNLLSGTIPGNLGGMAYLQVLNLGHNRLSGNIPDSFGGLKAIGVLDLSHNSLNGSIPGSLESLSFLSDLDVSNNNLTGSVPSGGQLTTFPASRYENNSGLCGLPLPSCSASKNRSVGVGVWKKKQPVAAGVVIGLLCFLLFALGLVLALYRVRKAQKKEEIREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHERAKGGGSNLDWGARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGRRPIDSSEFGDDNNLVGWSKKLYKEKRINEILDPDLIVQSSSESELFQYLRIAFECLEERPYRRPTMIQVMAMFKELQVDTDNDTLDSFSLRDSCIDEA 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02289 1209 FunFam Serine/threonine-protein kinase BRI1-like 1 630 687 - -
Vimu4g02289 1209 Gene3D Phosphorylase Kinase; domain 1 873 985 - -
Vimu4g02289 1209 Gene3D Ribonuclease Inhibitor 136 183 IPR032675 -
Vimu4g02289 1209 Pfam Protein kinase domain 912 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02289 1209 Gene3D Transferase(Phosphotransferase) domain 1 986 1203 - -
Vimu4g02289 1209 SUPERFAMILY L domain-like 682 803 - -
Vimu4g02289 1209 SMART serkin_6 910 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02289 1209 SUPERFAMILY RNI-like 326 616 - -
Vimu4g02289 1209 FunFam Brassinosteroid LRR receptor kinase 986 1189 - -
Vimu4g02289 1209 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 300 397 - -
Vimu4g02289 1209 ProSiteProfiles Protein kinase domain profile. 910 1187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02289 1209 Gene3D Ribonuclease Inhibitor 40 135 IPR032675 -
Vimu4g02289 1209 Pfam Leucine rich repeat 716 774 IPR001611 GO:0005515
Vimu4g02289 1209 Gene3D Ribonuclease Inhibitor 188 807 IPR032675 -
Vimu4g02289 1209 SMART LRR_typ_2 281 306 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 573 597 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 331 355 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 500 524 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 115 138 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 713 736 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 737 760 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 761 784 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 308 330 IPR003591 -
Vimu4g02289 1209 SMART LRR_typ_2 429 452 IPR003591 -
Vimu4g02289 1209 SUPERFAMILY Protein kinase-like (PK-like) 891 1184 IPR011009 -
Vimu4g02289 1209 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 204 376 - -
Vimu4g02289 1209 Gene3D - 630 687 - -
Vimu4g02289 1209 Pfam Brassinosteroid receptor island domain 623 687 IPR045381 -
Vimu4g02289 1209 Pfam Leucine rich repeat N-terminal domain 46 87 IPR013210 -
Vimu4g02289 1209 ProSitePatterns Protein kinases ATP-binding region signature. 916 939 IPR017441 GO:0005524
Vimu4g02289 1209 FunFam serine/threonine-protein kinase BRI1-like 2 871 985 - -
Vimu4g02289 1209 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Vimu4g02289 1209 Pfam Leucine Rich repeat 163 177 IPR001611 GO:0005515
Vimu4g02289 1209 Pfam Leucine Rich repeat 139 153 IPR001611 GO:0005515
Vimu4g02289 1209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1033 1045 IPR008271 GO:0004672|GO:0006468
Vimu4g02289 1209 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 685 806 - -
Vimu4g02289 1209 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 450 626 - -
Vimu4g02289 1209 SUPERFAMILY L domain-like 59 394 - -
Vimu4g02289 1209 PRINTS Leucine-rich repeat signature 359 372 - -
Vimu4g02289 1209 PRINTS Leucine-rich repeat signature 429 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02289 Vimu-Chr4 24823100 24833299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02289 47 1208 Receptor kinase-like Gene Family AT1G55610 62.765 0.0 1423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu4g02289 Pkinase 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02289 - - gmx:102670093 1968.74