Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02264 ATGGCTTTCTTCCAAATTCTAACCATTGTTACATTATTCATTCTTGTAACGAGTTCATCAGCTTGTGAAAATTCTACCATCTCCACCAACTTCAGCCAAACCAAGATCAATAGCAGTCCATCAACTTCCACACAAAGCTTCAAAAACTACATAAAAACCTCTTGCAACTCAACCACATATCCATCAATATGCTACAGCAGTTTATCCCCATATGCTGCAAAAATTGAAGCAGATCCTACGAAGCTGTGCAGTGTGTCTCTCTCCCTGGCATATAAGGCAGCAAAAAGTGCATCCAGCAGCATATCAAAGATTCTGAAGAAAAACAACATGACAGGGATTGCCGAGCAAGTGGTGCAAGATTGCTTTGGCAATGTGAAGGACTCCATTGGTGAGCTCAAAGATTCCCTTGATTCGTTGGGCCATATGGATGGTGCTGACAGAGAGTTTCAGATCAGCAACATAAAAACATGGGTGAGTGCTTCCATCACCAATGATCAAACTTGCTCAGATGGGTTTGATGAGATGAATGTGGATTCAACTTTGACAGAAAAAATCAGAAAGCTTGTTTTGGATGTGGCAAGGAAGACCAGCAATGCTTTGTATTTCATCAACAACAATTTGTACTGA 627 0.4083 MAFFQILTIVTLFILVTSSSACENSTISTNFSQTKINSSPSTSTQSFKNYIKTSCNSTTYPSICYSSLSPYAAKIEADPTKLCSVSLSLAYKAAKSASSSISKILKKNNMTGIAEQVVQDCFGNVKDSIGELKDSLDSLGHMDGADREFQISNIKTWVSASITNDQTCSDGFDEMNVDSTLTEKIRKLVLDVARKTSNALYFINNNLY 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02264 208 Pfam Plant invertase/pectin methylesterase inhibitor 50 200 IPR006501 GO:0004857
Vimu4g02264 208 NCBIfam pectinesterase inhibitor domain 38 205 IPR006501 GO:0004857
Vimu4g02264 208 CDD PMEI-like_3 53 205 - -
Vimu4g02264 208 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 200 - -
Vimu4g02264 208 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 205 IPR035513 -
Vimu4g02264 208 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 206 IPR035513 -
Vimu4g02264 208 SMART PMEI_2 46 202 IPR006501 GO:0004857
Vimu4g02264 208 FunFam Pectinesterase 47 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02264 Vimu-Chr4 24647052 24647678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02264 51 205 Carbohydrate Esterase AT1G53830 27.848 3.75e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02264 - - gmx:100527443 291.197