Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02263 ATGGAAACCCTTATTGCAAAAATAAGCATCACACTCCTATTCATGTCTTCAATCTTCTCAGTAGCTTCATCAAGAAGAGCACCAGCTTCATCCAGCAATATAGATTGGTGGTGCAACCTAACTCCACACCCTGTGCCATGCAAACACTACATCACCACCACTCAAACGAAGAGCCACCGTTTCACATTGATCAAGCACAGAACTATCTTCCGAGGAATACTCCTTGAGCATGCCCTAAACCAGGCTCTCATCATGCAGAAAGAAGCACTTCGCTCTGACCAAACCAGCATGCCAACAAAGAACCACAGAACCGTGCACGGTGATTGCGTCAAGCTCTATGGAAAAACCATCTTCCACCTCAATCGAACCCTCGAGTGCTTCCATGGGAACCAGAACTGCTCCTCCGTTGATGCACAGACATGGCTCAGCACTGCCCTCACTAACATTCAAACGTGTCAAGATGGAAAAGTAGAACTTGGTGTTGAAGATTCCAACAACAACAACAACAATGTGACTGAGATGATAAGGAACAGCTTGGCCATCAACATGGACTTCATGAAACTCGATCATCACACGGAAACAGCTCACGAAGAAGCGTTTCCAAGTTGGTTTTCAAAGCCTGAGAGGAAACTGTTGCAGTCCACAACGATAAAGGCTCATGCAGTGGTGGCAAAAGATGGTTCTGGGGATTTCAAAACCGTGCAAGATGCTCTCAATTCTGCAGCAAACAGGAAGGTGAAAACGAGGTTTGTGATACATGTGAAGAAAGGGGTTTACAAGGAGAATATCGAGGTTGCTGTGCACAATGATAACATCATGCTGGTCGGTGATGGAATCAGAAACACTGTAATCACGAGTAGCAGAAGTGTTCAACAGGGTTACACCACTTATAGCTCTGCAACTGCTGGCATAGATGGTCTCCACTTCATTGCAAGGGACATCACCTTCCAAAACACCGCCGGAGCTCAAAAGGGTCAAGCGGTGGCGCTCCGGTCAGCCTCCGATCTCTCCGTCTTCTACCGGTGCGCCATCATGGGCTTCCAAGACACGCTCATGGCCCACGCGCAGCGCCAATTTTACAGGCAATGCTACATCTACGGCACCGTTGACTTCATATTTGGCAATGCAGCAGTAGTGTTGCAAAACTGTTACATTTACGCCAGAAAGCCCTTAGAGGGCCAGGCCAACATGATCACGGCCCAAGGACGAGGTGACCCGTTTCAGAACACTGGTATTTCAATCCACAATTGTCAAATTCGGGCCGCCCCAGATCTCAGGCCCGTTGTTGACAAATACAACACCTTCTTGGGTAGGCCTTGGCAACAATACTCGAGAGTCGTGGTCATGAAAACTTTCATGGACACCTTGGTGAGCCCATTGGGGTGGTCCCCATGGGGTGATTCGAATTTTGCCCAAGACACACTTTACTATGGTGAATATCAAAACTATGGGCCTGGTGCATCTACAACCAATAGAGTGAAATGGCCCGGGTTTCATGTGATCACAAGCCCAGCTGAAGCGTCTCAATTTACCGTCACACGCCTCCTTGCAGGCCCAACATGGTTGGGCTCCACAACTGTGCCATTTACCTCTGGGCTTTGA 1602 0.4838 METLIAKISITLLFMSSIFSVASSRRAPASSSNIDWWCNLTPHPVPCKHYITTTQTKSHRFTLIKHRTIFRGILLEHALNQALIMQKEALRSDQTSMPTKNHRTVHGDCVKLYGKTIFHLNRTLECFHGNQNCSSVDAQTWLSTALTNIQTCQDGKVELGVEDSNNNNNNVTEMIRNSLAINMDFMKLDHHTETAHEEAFPSWFSKPERKLLQSTTIKAHAVVAKDGSGDFKTVQDALNSAANRKVKTRFVIHVKKGVYKENIEVAVHNDNIMLVGDGIRNTVITSSRSVQQGYTTYSSATAGIDGLHFIARDITFQNTAGAQKGQAVALRSASDLSVFYRCAIMGFQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVLQNCYIYARKPLEGQANMITAQGRGDPFQNTGISIHNCQIRAAPDLRPVVDKYNTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWGDSNFAQDTLYYGEYQNYGPGASTTNRVKWPGFHVITSPAEASQFTVTRLLAGPTWLGSTTVPFTSGL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02263 533 FunFam Pectinesterase 214 533 - -
Vimu4g02263 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 182 IPR035513 -
Vimu4g02263 533 SMART PMEI_2 29 181 IPR006501 GO:0004857
Vimu4g02263 533 PANTHER PECTINESTERASE 17 523 - -
Vimu4g02263 533 Pfam Plant invertase/pectin methylesterase inhibitor 33 181 IPR006501 GO:0004857
Vimu4g02263 533 NCBIfam pectinesterase inhibitor domain 9 182 IPR006501 GO:0004857
Vimu4g02263 533 Gene3D - 214 533 IPR012334 -
Vimu4g02263 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Vimu4g02263 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 185 IPR035513 -
Vimu4g02263 533 CDD PMEI-like_3 36 187 - -
Vimu4g02263 533 Pfam Pectinesterase 221 518 IPR000070 GO:0030599|GO:0042545
Vimu4g02263 533 SUPERFAMILY Pectin lyase-like 215 532 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02263 Vimu-Chr4 24640637 24642337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02263 27 533 Carbohydrate Esterase AT5G51500 54.563 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02263 K01051 - gmx:100800413 922.539