Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02262 ATGGCGAAAAGCCTTACCTTAATCACTATCTTCATATCCTTGTTTTCTCTGTCTTCCACAGCCCCTTCAAGCAATATTTTCCCTAACACCATTGATTTTTGGTGCAACAAAACCCCACATCCTCAAACATGCAAGCATTATTTCTCCTTGATAAATCACGAGCCTCATCAAGATGGTATCCCGAAAACTGCATTTCAGTTCAAGAACCTCATCCTCAGAATTGCAATGCAGCAATCGGTGGAAGCCCAGATTCAGATCATGTGGTTGGGAACCAAATGCAGAAGCAAGCAAGAAAAAGCAGCATGGTCAAACTGCATAACCCTCTACCAAGACACCATCAACCTTCTCAACCAAGCACTTAACCCTACCAAAAAAAGCACAACCTATGATCTCCAAACATGGCTCAGCACAGCCCTAACCAACATTGACACATGCCAAACAGGTTTCCACGAGCTTGGAGTTATCGACAACGTTCTACCCCTCATTCCCAACAAGAACATCTCAGAGATCATAAGTGACTTTTTGGCTCTTAACAACGCTTCTTCCTTCATTCCTCCAAAGACTCACAAAAATGGCTTCCCCAGATGGTTATCTCCCAAGGATAGGAAGCTTCTGGAGTCGTCGTCGTCGCCACCATCGTTGACACCAGATGTTGTGGTGGCTAAAGATGGTTCTGGGAACTTCGAGACCATAAAAGAAGCTTTGAAAGTAGTCCCCAGGATGAGCCAAAAGAGGTTTCTGATATATGTGAAACGTGGAGTTTACAATGAAAACATTGAGATTGAGAGTTCCATGAAGAACGTTATGCTGTATGGTGATGGTATGAAACTCACCATCATTTCTGGTAGCCGAAGTGTCGGAGGAGGTTCGACCACCTTTGATTCGGCAACCGTTGCGGTTAGAGGAGATGGATTCATTGGGCGTGGCATCACATTTCGCAACACTGCAGGAGCGGAGAAGCACCAAGCAGTGGCGGTGCGTTGCGGCGGTGACCTCTCAGTGTTCTACCGGTGTGGCTTTGAGGGCTACCAAGACACTCTGTATGTGCACTCGCAGAGACAGTTCTACAGAGATTGCTACATCTATGGCACCGTCGATTTCATCTTTGGCAACGCTGCTGTGGTCTTCCAATCCTGCAACATTTATGCAAGAAGGCCAATGCAAAAACAGAAAAACGTCATAACAGCACAAGGTAGAACAGATCCAAATCAGAACACTGGGATTTGCATTGAGAATTCACGAGTTATGGCTGCTGAAGACCTAACTCCAGTGCTGAGTTCCTTCAAAACATTCTTGGGAAGGCCATGGAGGGAGTATTCAAGGACAGTGTTCTTGCAGACTTACCTTGATCAATTGATTGATCCTGCAGGATGGTTGGAGTGGAAAGACGATTTTGCGCTTGAGACTTTGTACTATGGAGAGTTTAAGAACCTTGGTCCTAGGGCTTCCACGAGAGATAGAGTGAAATGGCGTGGCTTCCATTCCATAACAAGTTCAACCGAAGCTTCAAAATTCACTGTTGAAAATTTCATTGGTGGAAGATCATGGCTACCAAGCACAGGCATTCCATTTATCCCATGA 1581 0.4535 MAKSLTLITIFISLFSLSSTAPSSNIFPNTIDFWCNKTPHPQTCKHYFSLINHEPHQDGIPKTAFQFKNLILRIAMQQSVEAQIQIMWLGTKCRSKQEKAAWSNCITLYQDTINLLNQALNPTKKSTTYDLQTWLSTALTNIDTCQTGFHELGVIDNVLPLIPNKNISEIISDFLALNNASSFIPPKTHKNGFPRWLSPKDRKLLESSSSPPSLTPDVVVAKDGSGNFETIKEALKVVPRMSQKRFLIYVKRGVYNENIEIESSMKNVMLYGDGMKLTIISGSRSVGGGSTTFDSATVAVRGDGFIGRGITFRNTAGAEKHQAVAVRCGGDLSVFYRCGFEGYQDTLYVHSQRQFYRDCYIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNVITAQGRTDPNQNTGICIENSRVMAAEDLTPVLSSFKTFLGRPWREYSRTVFLQTYLDQLIDPAGWLEWKDDFALETLYYGEFKNLGPRASTRDRVKWRGFHSITSSTEASKFTVENFIGGRSWLPSTGIPFIP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02262 526 Pfam Plant invertase/pectin methylesterase inhibitor 30 176 IPR006501 GO:0004857
Vimu4g02262 526 Pfam Pectinesterase 217 513 IPR000070 GO:0030599|GO:0042545
Vimu4g02262 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 179 IPR035513 -
Vimu4g02262 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Vimu4g02262 526 NCBIfam pectinesterase inhibitor domain 1 178 IPR006501 GO:0004857
Vimu4g02262 526 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Vimu4g02262 526 PANTHER PECTINESTERASE 17 518 - -
Vimu4g02262 526 SMART PMEI_2 26 177 IPR006501 GO:0004857
Vimu4g02262 526 FunFam Pectinesterase 212 526 - -
Vimu4g02262 526 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vimu4g02262 526 Gene3D - 212 526 IPR012334 -
Vimu4g02262 526 SUPERFAMILY Pectin lyase-like 215 525 IPR011050 -
Vimu4g02262 526 CDD PMEI-like_3 34 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02262 Vimu-Chr4 24637492 24639158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02262 1 524 Carbohydrate Esterase AT2G45220 56.000 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02262 K01051 - gmx:100776412 870.152