Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02261 ATGATAATAGGAACAGAAGAACAGAACGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACAGGAACTCGCACAAATAGAGCAACTGCAGCTGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCTATCTATTCAAAGCATGACTTGATAGGAATGAGGAAAACCCTAGTCTTTTACAAAGGTCGAGCACCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAACGGCACACCACAGGCAAGTTTCAGAAATTATTACATTCATATGACTAGAGAGAAGAGAGAAAGAAGCTATTCTTCTCTCATGATTTAG 342 0.3889 MIIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQASFRNYYIHMTREKRERSYSSLMI 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02261 113 Gene3D NAC domain 3 108 IPR036093 GO:0003677|GO:0006355
Vimu4g02261 113 Pfam No apical meristem (NAM) protein 6 80 IPR003441 GO:0003677|GO:0006355
Vimu4g02261 113 SUPERFAMILY NAC domain 7 87 IPR036093 GO:0003677|GO:0006355
Vimu4g02261 113 ProSiteProfiles NAC domain profile. 1 103 IPR003441 GO:0003677|GO:0006355
Vimu4g02261 113 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02261 Vimu-Chr4 24630971 24634348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02261 3 89 NAC Transcription Factor Family AT1G12260 91.954 2.17e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g02261 NAM 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02261 - - nta:107804104 185.652