Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02250 ATGGAAAAAATTCTGGAAGCAGATGCAAATACTGTATCTCAGCGTTCCTCATCTTCTTCAGTTGTTGCTTTGGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTGAATAAGTTTGTTCCCGAGGGAATGATTATCTTCAAGTTGATACATGTTCATGCTACTATAAAAGGAGTTCCAACGCCATTGGGAAATGTGATCCCTCTTTCACAAGTGCGTAATGATGTAGCAACTGCATTCAAAAAGGAAGTGGAGTGGCAAACAAACCAAATGCTGCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTGGATGTTGTACTGATTGAATCAGATGATGTGGCTATTGCAATAGCAGAGGAAGTGGCTAAGGGTGCTATCACCAAACTTGGAAAATTGTCCATACGACAGTCAGACATGCCTATTGATGGAAGCATTGTAGATGATGCTAGTGAAACCAGTTTGTCTTCCAGCAGCTCATCTAACTACACTTCCACCTCTCAGACAGAATCTGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACACAACGATTTCAAGCTCTTTCAAGTATAAACAGTGCACTACTGAGCACAAATCCGAGTTTAAGTGACACTAGCCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGAAAATACTGCTACCAGCTCTGCCAGAAACTCAGACATTGATCATGCCTTAAGTCGTGTTTCTAGTTGCAAAAGCTTTATTTCTGATACTGAATCTTGGATGTATGATCAAAATTCTATAAAGGATGTGGCACTAGCAACTACACTTCCATCACCTAATAGGCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCCAAGGACTTCATGCAGTAGCTCAAAGTGAGAAAATTGAAGCATCCCGGAAGCTGAATGACCTTAGCAAGAGACGGTCAGAAGAAACCATAAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAAGAATTTGCAAAACTAGAAATAGAGAAATATCAGGATGCATCCAGAGAAGCTGTATATATGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAGGAAACAGAGTTGAAAGTCATCCGTGCCACAAAAGAGAAAGAAAAGTTGGAGGATGCTCTTAGTGGTAATATACTACAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGTAATTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACCAATGGAAATCGTGAAAGCAAGCAATTCCAACAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTGGGTGCATGTCCCGATCATGGATGTCTTGTATATGAATATATGGAGAACGGTAACCTGGAAGACAGACTGCTGAGAAAAAACAACACATGCCCAATCACATGGTTTGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTAAAACCAGCAAACATCTTGCTTGGTCGAAACCTTGTCAGCAAGATTGGTGACATTGGACTTAGCACAGTACTCCATTCCGATAATTTATCTACCATGTACAAGGACACAGCACCTGTTGGGACACTATGCTACATTGATCCTGAGTATCAAAGGACTGGCTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACTGCAATTGAAGGTGGAAATTTGACAGATATATTGGATCCAGAGGCAGGAGCGTGGCCATTTAAAGAGACACTAGATCTGGCTTTGTTGGGACTGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAAAACTCTGCTTCAACTGTTACTATCAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATACGATCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACAAACATAGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAATGGAAGTCCGCAGAATCATGA 2316 0.4098 MEKILEADANTVSQRSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHATIKGVPTPLGNVIPLSQVRNDVATAFKKEVEWQTNQMLLPFKRLCEQRKVHVDVVLIESDDVAIAIAEEVAKGAITKLGKLSIRQSDMPIDGSIVDDASETSLSSSSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNPSLSDTSHSRGQSLDLGRENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSIKDVALATTLPSPNRQAKLNLELEKLRIELRHVQGLHAVAQSEKIEASRKLNDLSKRRSEETIKMKEIIAKEEKAKEFAKLEIEKYQDASREAVYMKECAEREAVERKETELKVIRATKEKEKLEDALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCNLYHTTVAVKVLNTNGNRESKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTCPITWFERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPFKETLDLALLGLSCAELRRRDRPDLKDQVLPILDRLKEVADRAQNSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNIALPHKHLIPNYTLLSAILEWKSAES 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02250 771 CDD STK_N 23 136 - -
Vimu4g02250 771 ProSitePatterns Protein kinases ATP-binding region signature. 423 444 IPR017441 GO:0005524
Vimu4g02250 771 SMART serkin_6 417 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02250 771 Coils Coil 372 394 - -
Vimu4g02250 771 Coils Coil 336 356 - -
Vimu4g02250 771 ProSiteProfiles Protein kinase domain profile. 417 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02250 771 CDD RING-Ubox_WDSUB1-like 702 756 - -
Vimu4g02250 771 SMART Ubox_2 704 766 IPR003613 GO:0004842|GO:0016567
Vimu4g02250 771 SUPERFAMILY RING/U-box 699 768 - -
Vimu4g02250 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 771 IPR013083 -
Vimu4g02250 771 SUPERFAMILY Protein kinase-like (PK-like) 400 671 IPR011009 -
Vimu4g02250 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Vimu4g02250 771 ProSiteProfiles U-box domain profile. 700 771 IPR003613 GO:0004842|GO:0016567
Vimu4g02250 771 MobiDBLite consensus disorder prediction 155 173 - -
Vimu4g02250 771 Pfam U-box domain 702 769 IPR003613 GO:0004842|GO:0016567
Vimu4g02250 771 Gene3D Phosphorylase Kinase; domain 1 385 489 - -
Vimu4g02250 771 Pfam Protein kinase domain 420 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02250 771 Gene3D Transferase(Phosphotransferase) domain 1 490 700 - -
Vimu4g02250 771 MobiDBLite consensus disorder prediction 152 173 - -
Vimu4g02250 771 PANTHER OS02G0152300 PROTEIN 21 765 - -
Vimu4g02250 771 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02250 Vimu-Chr4 24545016 24552236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02250 19 768 U-box Gene Family AT4G25160 51.341 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu4g02250 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02250 - - gsj:114409387 1278.85