Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02239 ATGGAATCCAAAGATGGTGATGATAAGAATGAAAAACATTTACTACAACACCCTTTGATGAAAGTAGGAGTTGTTGTTGAAGCATCTTCTACTGTTGTTAATCCTCAACAAGCACAATACCAGATTCCACAACAAGGTTTAATGGAGATTTACATGACTCCTCAGAACATAGCACAATCGTTACACACACAAGGTAGTGTTACATCAGACGAACATGGTAGAAAACGAAGCACATCAGAAGATAAGACCTTTGAGAAAAGACAAAAGAGGATGATTAAGAATAGAGAATCTGCTGCACGTTCTAGAACAAGAAAACAAGCTTACACAATTGAATTGGAGTACAAAGTCTCCCGTCTGGAAGAAGAAAATCAAAAGCTCAGGAGACAAAAGAACTTTAATTCAAGCGGATCATATCGACCTTCAAGCAAGGACGACTTAGCTCGACTTATCCTATCCCACTTTAAGAAGGAGTTTTGGGAATTGAAACTTTGTTTTGACCCAAGGTCCATGGACCAAAACGACACCTCTCTAGTCATAAGTACTAAAAATCATACATCATGGAGTCTTCACGTCAACTGGCCAGACTCCCAACAATCTTCATGTCAAGTGGAGCCTCTCTTGCGTCCAAACTACTCGGATGGTACATGTAGAAGGTATGTCGATGCTAAATTGGCCATGCCGTTTAGTCAGGATGGTCGACTACAGGTGATCTGTGTAGAGTTCGGCCAAAGAATGGTTAACCAAAAGATAGTCAACAAAAGGTGGTCAGCCAAAGGTGGTTGGCTCAAAGTGACCGATCAAAGGATGGTCGTCAAAATGTGGTCGACCAAGAGTGGTTGGCCTAGAATGGTCAGTCAAGGGTCGTCAACCTAG 873 0.417 MESKDGDDKNEKHLLQHPLMKVGVVVEASSTVVNPQQAQYQIPQQGLMEIYMTPQNIAQSLHTQGSVTSDEHGRKRSTSEDKTFEKRQKRMIKNRESAARSRTRKQAYTIELEYKVSRLEEENQKLRRQKNFNSSGSYRPSSKDDLARLILSHFKKEFWELKLCFDPRSMDQNDTSLVISTKNHTSWSLHVNWPDSQQSSCQVEPLLRPNYSDGTCRRYVDAKLAMPFSQDGRLQVICVEFGQRMVNQKIVNKRWSAKGGWLKVTDQRMVVKMWSTKSGWPRMVSQGSST 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02239 290 Coils Coil 109 129 - -
Vimu4g02239 290 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 84 129 IPR004827 GO:0003700|GO:0006355
Vimu4g02239 290 CDD bZIP_plant_BZIP46 86 130 - -
Vimu4g02239 290 SMART brlzneu 82 148 IPR004827 GO:0003700|GO:0006355
Vimu4g02239 290 MobiDBLite consensus disorder prediction 61 84 - -
Vimu4g02239 290 MobiDBLite consensus disorder prediction 68 84 - -
Vimu4g02239 290 Gene3D - 85 135 - -
Vimu4g02239 290 SUPERFAMILY Leucine zipper domain 86 132 IPR046347 GO:0003700|GO:0006355
Vimu4g02239 290 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 89 104 IPR004827 GO:0003700|GO:0006355
Vimu4g02239 290 Pfam bZIP transcription factor 86 128 IPR004827 GO:0003700|GO:0006355
Vimu4g02239 290 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 14 140 IPR043452 GO:0003700|GO:0045893
Vimu4g02239 290 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 84 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02239 Vimu-Chr4 24468141 24471538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02239 15 130 bZIP Transcription Factor Family AT2G41070 51.128 1.32e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu4g02239 bZIP_1 2.8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02239 K14432 - vra:106760633 215.312