Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02237 ATGTTTATCGGTAATGAATTGACACTACTTAGTTGTTATTTATATTCAATGATGGATGGACAGGGAACATTTCTACCACTGATTGTGCCACCAACAATTTACCAAGCAGGTCTTTGGTCAACTTGGTTGACCGTGCTTTGCTCTCTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGTTGAATGCATCTCCATCTGCTACACCCTGGACGTATCTTCGTGTATATTCGGCATTATTATTTGTTTTCATGGCTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCCATGTATCTGCTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGCTTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGGGATTTCCGATCACCTAAACTGCTGGACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGTAACTTGGGGTTTTTCCTAGACATGGCTACTTTTTTCATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGCATTACTTAGTGCAATAGTAAATCGCATAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTCGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGAGTGCCTGAAAATGAAGCAAGCTCTGACACAGGGACTATGTCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTAGACCGGCCAAACAATGCTAGACATGCCATGCCTACCGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTACTTGGAGGCAAGAAAAAGAATTCCAAGGTGGCAATTCTGATGTTGCCTGGTCACCTCTCAGGATGGTAAAAAATGACTGGCTAGCTTTTGAAGTACATGGTGTGGGTATCAGGAGATGGCTGGATTCAGGTTGGCTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCCGGTCCATCTACTGCTATGAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCGAGTGCTTCAACCATTCCTCCCCCTAATGGAAGATCATTAGGACGAGCTGGTAGTTTACATTTAAGGACTGCTTCACAGCCTCCAAACGATAATGTGGCTAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGTGTGTTTGGGATTATTTGCAGCATGA 1554 0.4305 MFIGNELTLLSCYLYSMMDGQGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVLWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNRDFRSPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFEGVPENEASSDTGTMSSDEQLARQISAGLDRPNNARHAMPTGLYPNQTLNTPEGVTWRQEKEFQGGNSDVAWSPLRMVKNDWLAFEVHGVGIRRWLDSGWLHSWPNQGVDGAGPSTAMRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASASTIPPPNGRSLGRAGSLHLRTASQPPNDNVANILAMAETVREVLPHIPDDMIFQVCLGLFAA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02237 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 293 IPR013083 -
Vimu4g02237 517 FunFam E3 ubiquitin protein ligase RIN2 218 297 - -
Vimu4g02237 517 Pfam Ring finger domain 243 287 IPR001841 -
Vimu4g02237 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 21 509 - -
Vimu4g02237 517 ProSiteProfiles Zinc finger RING-type profile. 245 287 IPR001841 -
Vimu4g02237 517 SMART ring_2 245 286 IPR001841 -
Vimu4g02237 517 SUPERFAMILY RING/U-box 232 293 - -
Vimu4g02237 517 CDD RING-H2_AMFR 243 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02237 Vimu-Chr4 24434993 24441757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02237 25 328 C3H Transcription Factor Family AT3G16090 28.395 7.23e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02237 K10636 - gmx:100820578 826.239