Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02236 GAAAGAAGGTTGAAAGAGTTAGATGGTAAAAGATGTGAACTATGTGGAGATGATATAGGGATTAATGGAGATGGTGAGCTCTTTGTGGCCTGCAATGAGTGTGCTTTTCCTGTCTGTAAGAGCTGTTATGAGTATGAACGTAGGGAGGGAAACCAAGTATGCCCTCAATGCAAAACAAGATTCAAGCGTCTCAAAGGGTGTGAAAGAGTTGAGGGGGATGAAGAAGAGGATGATGTTGATGACTTGGAGAATGAACATGATTTTGATGGAGGAAATGAACAAGATTTGAAAACCACCATGTCTCGTGAGGAACAGGAGGAAGAATTTTCTGAAGAAAATCAAGCTTTGGTTCCTTCAAGCTCAACCACATTGAGCAAAGAGATGGTTCCATTGCAAACAAGATCCATGGATCCTTCCAAGGACCTTGCTGCTTATGGCTATGGAAGTGTTGCATGGAAGGAGAGAATGGAGACATGGAAGCAAAGACAAATGAAACTTGGTAATGTGAGAAAAGAAAAAGACAACAAGGAAGATTCAAACAACCTTGTAGATGATGATGATGATGACACTGAATTCCTTATAATGGATGAAGGAAGACAGCCATTATCAAGAAAGATGTCTGTTCCATCAAGTCAAATTAACCCTTACCGAATGGTAATATTAATGAGGCTAGTTGTTCTTGGATTCTTCTTCCATTACCGAGTTGTGAACCCTGTAGAACATGCCTATGCTTTGTGGCTGGTGTATGAAAAGGAAGGGAAAGCTTCTCAACTTTCTTCAATTGATATATTTGTGATCACAGTGGATCCATTAAAAGAGCCTCCTCTTGTGACTGCAAACTCAGTTCTTTCCGTTCTAGCCATGGATTACCCTGCTGAAAAGGTGACATGTTATGTATCTGATGATGGGGCATCAATGCTAACATTTGAGGCTTTATCTGAGACTTGTGAATTTGCAAAGAAATGGGTTCCTTTTTGTAAGAAGTTTAGCATTGAGCCAAGAGCTCCTGAATGGTACTTTGCTGAGAAGATAAGCTACCTAAATGACAAGGTGCATCCATCTTTTGTGAAAGAGAGAAGAGCAATGAAGAGAGAATATGAAGAGTTTAGAGTTCGAATTAACACTCTAGTTGCAAAGTCTAGGAAGGTCCCAGAAGAAGGGTGGACAATGCAAGATGGAACACCATGGCCTGGAAATAATGTTCGTGATCATCCAGGAATGATACAGGTTTTTCTTGGAGAAACTGGGGGATATGACATGGATGGCAAGGAACTGCCACGCTTGGTATATGTTTCTAGAGAAAAAAGACCAAATTTCAATCACCACAAAAAAGCAGGGGCATTAAATGCATTGGCTAGAGTGTCTGCAGTACTTTCCAATGCCCCTTTTGTGTTGAACTTGGACTATGATCATTACATCAACAATAGCAAGGTTGTAAGAGAGGCAATGTGTTTCATGATGGATCCAGTAGTAGGAAAAAGGGTCTCCTATGTGCAGTTCTCACAGAGATTTGATGGTATTGAGCAACATGCCAATCAAACAAATGGATTCTTTGATATTAACATGAAAGGCTTGGATGGTATACAAGGACCTACATATGTTGGAACAGGATGTGTCTTTAGAAGGCAAGCACTTTATGGTTTTGATTCTCCAAGAAAAAAGAAGCCTCCAACCAAGACATGCAATTGTTGGCCAAAGTGGTGTTGTTGTGGATGTTGTTTTATGGGGAACAAGAAGAAGAAGAAGCTAAAGAAACAGAAGTTTGAGATAATGGAAAACAGCCATAGTAAAGTATATTCTGAATCATCTGCAGTTGAAGGTGTTCTGAATTATATTGAAAATGGCACAGAAGATGAAAAATTAGCTCAGATTTCAAATCCAAAGTTTGCCAAGAAATTTGGACAATCTCCTATCTTTGTTGCATCTACTCAACTGTTGGATGGTGAGACACTCAAACATGGAAATCTTGCTTCTCAACTTACAGAAGCAATACATGTTGGGTGGATATATGGTTCAGTTACAGAAGACATATTAACAGGCTTTAAAATGCATTGTCATGGATGGAGATCTATATATAGTATTCCTCAAAGACCTGGATTTAAAGTATCTTCTCCAAGAAACCTTTCTAGTGGTTTGCAACAAGTCTTTCAATGGGCACTTGGATCAATGGAAATATTCATGAGTAAACATTGCCCTCTTTGGTATGGATATGGAGGAGGATTAAAGTGGTTACAACGAATTTCTTACATAAATGCAATAGTATATCCATGGACATCAATACCTTTGGTGGTGTATTGTACCCTACCTGCTGTTTGCTTGCTCACTGGCAAATTTATCATTCCTGAGCTCAGCAACACAGCTGGCATGTGGTTTGTGTCTCTTTTCTTCTGCATTTTCACCACAAGTCTGTTAGAGATGAGATGGAGTGGTGTCACAATTGATGAGTGGTGGAGAAATGAGCAATTCTGGGTGATTGGAGGTGTGTCAGCACATTTTGTTGCAGTGTTCCTGGGGATGTTTAAGGTGTTGGCAGGTGTAAATACAAACTTCATAGTGACATCAAGGGAAGATGATGAGAAGGAGCATTCTGACATGTTTGCTTTGAATTGGACCACTTTACTGATCATACCAACAACGTTGCTGATACTGAACATAATTGCTGTGGTTGCTGGAGTCTCAAATGCAATAAACATTGGGTTTGAGGCATGGGGGCCTCTACTTGGTAAACTCTTGTTTTCTTTTTGGGTGATTCTTCATTTATATCCATTCCTAAAAGGCATGGTAGGTAGGCATAACAGGACTCCTACCATTGTGATTGTTTGGGCAATCCTTCTTGCCACTTTCTTTTCTGTCTTGTGGGTGAAAATTGATCCATTTTTACCCAAGTCAAGTGGGCCAGTTCTAGAGGAATGTGGGTTGGATTGCATTTAG 2931 0.3992 ERRLKELDGKRCELCGDDIGINGDGELFVACNECAFPVCKSCYEYERREGNQVCPQCKTRFKRLKGCERVEGDEEEDDVDDLENEHDFDGGNEQDLKTTMSREEQEEEFSEENQALVPSSSTTLSKEMVPLQTRSMDPSKDLAAYGYGSVAWKERMETWKQRQMKLGNVRKEKDNKEDSNNLVDDDDDDTEFLIMDEGRQPLSRKMSVPSSQINPYRMVILMRLVVLGFFFHYRVVNPVEHAYALWLVYEKEGKASQLSSIDIFVITVDPLKEPPLVTANSVLSVLAMDYPAEKVTCYVSDDGASMLTFEALSETCEFAKKWVPFCKKFSIEPRAPEWYFAEKISYLNDKVHPSFVKERRAMKREYEEFRVRINTLVAKSRKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGETGGYDMDGKELPRLVYVSREKRPNFNHHKKAGALNALARVSAVLSNAPFVLNLDYDHYINNSKVVREAMCFMMDPVVGKRVSYVQFSQRFDGIEQHANQTNGFFDINMKGLDGIQGPTYVGTGCVFRRQALYGFDSPRKKKPPTKTCNCWPKWCCCGCCFMGNKKKKKLKKQKFEIMENSHSKVYSESSAVEGVLNYIENGTEDEKLAQISNPKFAKKFGQSPIFVASTQLLDGETLKHGNLASQLTEAIHVGWIYGSVTEDILTGFKMHCHGWRSIYSIPQRPGFKVSSPRNLSSGLQQVFQWALGSMEIFMSKHCPLWYGYGGGLKWLQRISYINAIVYPWTSIPLVVYCTLPAVCLLTGKFIIPELSNTAGMWFVSLFFCIFTTSLLEMRWSGVTIDEWWRNEQFWVIGGVSAHFVAVFLGMFKVLAGVNTNFIVTSREDDEKEHSDMFALNWTTLLIIPTTLLILNIIAVVAGVSNAINIGFEAWGPLLGKLLFSFWVILHLYPFLKGMVGRHNRTPTIVIVWAILLATFFSVLWVKIDPFLPKSSGPVLEECGLDCI 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02236 976 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 245 940 - -
Vimu4g02236 976 Pfam Zinc-binding RING-finger 3 79 IPR027934 -
Vimu4g02236 976 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 419 554 IPR029044 -
Vimu4g02236 976 MobiDBLite consensus disorder prediction 89 104 - -
Vimu4g02236 976 SUPERFAMILY RING/U-box 4 81 - -
Vimu4g02236 976 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Vimu4g02236 976 MobiDBLite consensus disorder prediction 72 88 - -
Vimu4g02236 976 MobiDBLite consensus disorder prediction 169 188 - -
Vimu4g02236 976 Pfam Cellulose synthase 261 967 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu4g02236 976 SUPERFAMILY Nucleotide-diphospho-sugar transferases 275 774 IPR029044 -
Vimu4g02236 976 CDD mRING-HC-C4C4_CesA 12 60 - -
Vimu4g02236 976 MobiDBLite consensus disorder prediction 72 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02236 Vimu-Chr4 24426081 24433018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02236 2 976 Glycosyltransferase AT2G21770 57.116 0.0 1262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02236 K10999 - gmx:100815971 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02236 4 24426081 24433018 Vimu4g02236 4 24426081 24433018 ECH