Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02231 ATGGCAACTCATCCATTTATTCTTTCTATCACCATTTTCAAGCTAGTAATAATCTTCTTCTCTCAATCTTCCACAGCATCAGACACCATCACTCAATCTCAGCCACTTCATGATGATGGCAGTACCTTAATTTCCAATGACGGAACCTTTGAGTTAGGGTTCTTCAGTCCCGGCAGTTCCACAAACCGCTACATAGGAATATGGTACAGAATCATCCCAGTCAAAACCATTGTCTGGGTTGCCAACCGTGACAGTCCAATCAAAGGCAACGACAATAGCAGCAACAACAACATGTTAACCATCACCAATGAAGGCAACATGGTGCTTCTTGACAACAACAATGAAACTGTCTGGTCAACAAACATCACATCACTCACAACTCAACCTCTGTTGAATCCCATGGTGCAGCTCTTAGACACTGGAAACTTGGTAGTTAAAGAAGGGAACAGCAGCAGCAGCAACAACAACAATGAGAAAGAAGAAAACTTTTTGTGGCAAAGCTTTGACTACCCTTGTGATACTCTCTTGCCAGGAATGAAGCTTGGATGGGACCTTAAAAGGGGTATTGATAGGAAGTTAAGGGCATGGAAGAGCTGGGATGATCCTTCTTCAGGGAACTTAACTTGGGGTATGGTCCTTAGTAGTTACCCTGAATTGGTTTTGAAGAAAGGTTCAGTTGAGTATCAAAGAAGTGGACCTTGGAATGGAGCAGGGTTCAGTGGCCAACCTGTGTTGAGAATCACTCCAATTGTTGACACAAAATTTGTGAATGATTCAAATGAGGTTTACTACTCATACTCTCTCAGGAACAACTCTGTGATCTCAATAACTTACTTGAACCAAACCCTTCTTCATCGCCATCGCATAACATGGATTCCTGAAAACAAAACTTGGAGGGTTTATGAGTCTGTTCCTAGAGATGATTGTGACCCTTATAACACATGTGGTCCAAATGGAAATTGCAAGGTTAACGAGACACCGATTTGCCAGTGTTTGGAAGGCTTTGACCCAAAATCTCCCCAGAATTGGAACTCCCTTGACTGGTCACAAGGATGTGTGCGTAGTCAACCTTGGAGTTGTGGGGTGAAAAATCAAGATGGTTTTCGAAGATTTGCTTCGATGAAAGTTCCTGATACGAGAACTTCTTTGACTTACGGAAACATGTCACTTGAAGATTGTAGGATCGAATGCTTGAAAAATTGTTCTTGCATGGCTTATTCAAACTTGGACATAAGGGAAGATGGCAGTGGTTGTGCCATTTGGTTTGGTGATCTCATTGATTTGAAATTGGTTCAAGCAAGCCGACAAGACATATACATTCGAATGGCTGTTTCAGGAAATGAACACGGCACAAAGAATGTTGTATCAACCGAAGATGATGAAGAAAACCAAGATTTTGAGCTTCCTTTGTTTGATCTCGCTTTAATATCTGTTGCCACCAATGGTTTCTCAGAAGATAACAAGCTTGGAGAAGGTGGTTTTGGACCAGTATATAAGGGTACACTCCCTAATGGAAGAGATATTGCCATCAAAAGACTCTCAACGAGTTCATCTCAAGGGATCAAAGAATTCAAGAATGAAGTTATATTGTGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGTATTCAAGAAGAAGAGAAAATTGGTTATATGGCACCTGAATATGCCATTGATGGTTTATTCTCCATAAAATCAGATGTATTCACCTTTGGCATACTATTGTTGGAGATTGTGAGTGGAAAGAAAAATACAGGAGTTACATATACAAGTGATACTAGTAATCTCATTGGACATGCTTGGAAATTGTGGAAAGATAATGAAGCAACGAAATTGGTTGATATGTATTTAGAAGAGTCATACGTTGTATCAGAAGCCTTACGTTGCATTCAAGTTGGTCTTTTATGTCTACAACATCATCCGAATGACAGACCAAACATGGCGTCAGTGGTTGTTATGTTGACCAATGAAACTATTTTAGCTCAGCCAAAGGAGCCTGGTTTCTTGATAGAAAGAGTGGTCGCTAATGAAGTAGAATCTTCTACTGAAAAACCAACATCTTTTTCAGTTAACGAGGTGTCTATTTCTCTAGTTGATGCTAGATAA 2118 0.4013 MATHPFILSITIFKLVIIFFSQSSTASDTITQSQPLHDDGSTLISNDGTFELGFFSPGSSTNRYIGIWYRIIPVKTIVWVANRDSPIKGNDNSSNNNMLTITNEGNMVLLDNNNETVWSTNITSLTTQPLLNPMVQLLDTGNLVVKEGNSSSSNNNNEKEENFLWQSFDYPCDTLLPGMKLGWDLKRGIDRKLRAWKSWDDPSSGNLTWGMVLSSYPELVLKKGSVEYQRSGPWNGAGFSGQPVLRITPIVDTKFVNDSNEVYYSYSLRNNSVISITYLNQTLLHRHRITWIPENKTWRVYESVPRDDCDPYNTCGPNGNCKVNETPICQCLEGFDPKSPQNWNSLDWSQGCVRSQPWSCGVKNQDGFRRFASMKVPDTRTSLTYGNMSLEDCRIECLKNCSCMAYSNLDIREDGSGCAIWFGDLIDLKLVQASRQDIYIRMAVSGNEHGTKNVVSTEDDEENQDFELPLFDLALISVATNGFSEDNKLGEGGFGPVYKGTLPNGRDIAIKRLSTSSSQGIKEFKNEVILCAKLQHRNLVKVLGCCIQEEEKIGYMAPEYAIDGLFSIKSDVFTFGILLLEIVSGKKNTGVTYTSDTSNLIGHAWKLWKDNEATKLVDMYLEESYVVSEALRCIQVGLLCLQHHPNDRPNMASVVVMLTNETILAQPKEPGFLIERVVANEVESSTEKPTSFSVNEVSISLVDAR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02231 705 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 202 IPR036426 -
Vimu4g02231 705 ProSiteProfiles Bulb-type lectin domain profile. 27 158 IPR001480 -
Vimu4g02231 705 Gene3D Transferase(Phosphotransferase) domain 1 551 666 - -
Vimu4g02231 705 Pfam S-locus glycoprotein domain 230 339 IPR000858 GO:0048544
Vimu4g02231 705 Gene3D Phosphorylase Kinase; domain 1 445 550 - -
Vimu4g02231 705 CDD PAN_AP_plant 359 443 - -
Vimu4g02231 705 Pfam Domain of unknown function (DUF3403) 659 705 IPR021820 GO:0004674
Vimu4g02231 705 ProSiteProfiles EGF-like domain profile. 305 341 IPR000742 -
Vimu4g02231 705 SMART blect_4 33 171 IPR001480 -
Vimu4g02231 705 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 649 - -
Vimu4g02231 705 Pfam Protein tyrosine and serine/threonine kinase 486 551 IPR001245 GO:0004672|GO:0006468
Vimu4g02231 705 Pfam Protein tyrosine and serine/threonine kinase 552 656 IPR001245 GO:0004672|GO:0006468
Vimu4g02231 705 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 545 663 - -
Vimu4g02231 705 Pfam D-mannose binding lectin 76 197 IPR001480 -
Vimu4g02231 705 CDD B_lectin 39 171 IPR001480 -
Vimu4g02231 705 ProSiteProfiles PAN/Apple domain profile. 360 443 IPR003609 -
Vimu4g02231 705 ProSiteProfiles Protein kinase domain profile. 483 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02231 705 Gene3D Hepatocyte Growth Factor 359 440 - -
Vimu4g02231 705 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 447 557 - -
Vimu4g02231 705 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 168 - -
Vimu4g02231 705 Pfam PAN-like domain 360 428 IPR003609 -
Vimu4g02231 705 SMART ntp_6 363 442 IPR003609 -
Vimu4g02231 705 PIRSF SRK 445 553 IPR024171 GO:0004674
Vimu4g02231 705 PIRSF SRK 1 459 IPR024171 GO:0004674
Vimu4g02231 705 PIRSF SRK 552 705 IPR024171 GO:0004674
Vimu4g02231 705 SUPERFAMILY Protein kinase-like (PK-like) 469 687 IPR011009 -
Vimu4g02231 705 Gene3D - 21 168 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02231 Vimu-Chr4 24389907 24393714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02231 471 705 Receptor kinase-like Gene Family AT4G23280 37.193 6.77e-45 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g02231 B_lectin 2.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02231 - - tpra:123915417 699.893