Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02229 ATGCTTACGGCCAGGACAGTGTGGTCCACCTACATGCATGATCACCAGAGCTTCCAAACAAGAAGGAGGCCACGATCACCAGAGGTAGAATGGCTCCTCAAGGAAGAAGAGAATTGGCAGAAACTTTGTTTGATCGATGTGGAGGAAGAGCCTTGCAAAATGAATTGTGTTCAAGAACTTCAAAATCATCCTTCACATGTTTTCATTGCAACTGACTCACGAATCATGGGTTCCAAGAGACCACATGTGATCATGACACCGTCGACAACAGCTTCTGATAACTACCAACTAGACCCTTTCTCTGTTAATATTCCTGAACTTCCAACATCAAATTCAAGTTTTGGCAACGTCTTCATCAACCCGTTTGAGAACTCTCTTGTTAGCTCATCATCACGCAGAAGTTCCATGTCCAATCGCTCTTCTGGGAGCAAGAGCAACAACTCCATCCATGAAGTGAGTTTGAGCGGCTCGGCATCCAAATCCATTCCCGTTAGGTATGGCTCAAAGGGTGCAGATTCTGAAGGACTAAGCGTGTCACAGAGGGAACTCAGAGATGAGGATGCGAGGTTAGTGTACATAAACGACCCTTTGAAAACGAATGAGACTTTTTTGTTTGCTGGAAACTCTATCCGCACGAGCAAATACTCCCTCCTCAGTTTCATTCCCAGGAACCTTTTTGAACAGTTCCACAGAATTGCTTACGTGTACTTTCTCATAATTGCCATTCTCAATCAGCTTCCTCAGCTAGCAGTTTTTGGAAGAGCTGTTTCGATCTTGCCACTGTCCTTTGTGCTGTTTGTCACAGCTGTGAAGGATGCGTATGAGGATTGGAGAAGGCACGGGAGTGATAAAGTTGAGAACAATAGGTTGGCATCGGTTTTGGTTGATGGAAACTTTTTGGAGAAGAGTTGGAGGGATATTAGAGTTGGTGAGGTGATAAAGATCAAGGCAAATGAACCCATCCCCTGTGATATTGTGTTGCTCTCAACCAGTGATCCAACTGGGGTTGCATACGTGCAGACTATTAATCTAGATGGGGAGTCAAATTTGAAGACAAGGTATGCAAAGCAAGAGACGCATGGTAAGGAGGGGTTTGGTGGGGTGATCAAGTGTGAGAAACCCAATAGGAACATATATGGATTTCTGGCTAACATGGAAGTTGATGGCAAAAAGTTGTCACTTGGATCCTCCAACATTGTGCTTCGTGGATGTGAGCTCAAGAATACTAGTTGGGCCATTGGTGTTGCTGCGTATTGTGGGAGTGAGACCAAGGCTATGCTGAACAGCTCAGGAGCTCCTTCTAAGAGGAGCAGATTGGAGACACGAATGAATTTTGAGATCATTTGGCTCTCTTTCTTCCTCGTGGCATTGTGTACAATCACCTCAGTTTGTGCTGCTGTGTGGTTAAAGCGCCACAAAGATGAGTTGAATCTGTTGCCATATTATAGGAAACTAGACTTTTCAGAAGAGGGGCAAGTGGAAAGCTACGAGTACTATGGATGGGGGTTGGAAGTTCTCTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCCATTTCCTTGTACATTTCCATGGAGCTTGTGAGGGTTGGTCAGGCCTTCTTCATGATCCGAGACAACAGAATGTATGATGAGGAAACCAAGTCAAGGTTTCAGTGCAGAGCTTTGAACATTAATGAAGATTTGGGGCAGATTAAGTATGTTTTCTCGGATAAAACTGGCACACTAACTCAGAACAAGATGGAGTTTCAATGTGCAAGTATCTGGGGGGTTGATTACAGTCCTACAGAGAACGGCATGGAGGGTGATCAAGTTGAACATTCTGTGGAAGTGGATGGAAAGGTCTTCAGACCAAAGATGAAGGTGAAAGTTAATCCAGAACTTTTGCAGCTAGCAAGAAGTGGATTTCTCAATTTGGAGGGAAAACGGATTCATGATTTCTTTCTAGCACTGGCAACCTGCAACACTATTGTGCCTATTGTTGTTGACTCGCCTGACCCTGATGTCAAACTGATAGATTACCAAGGAGAATCACCAGATGAACAAGCATTAGCTTATGCTGCTGCAGCCTACGGTTTTATGCTAATAGAACGAACGTCGGGCCATATAGTCATCGATATTCATGGAAAAAGACAAAAGTTCAATGTCTTGGGTATGCATGAGTTTGACAGTGACAGGAAGAGGATGTCAGTCATATTGGGGTACCCTGACAATTCTGTGAAAGTGTTTGTCAAAGGAGCAGACACATCCATGCTTAATGTGATAGACAAGTCATTTAGCATGGACTTAGTAAGAGCCACGGAAGCACATCTTCACTCTTACTCTTCCATTGGTTTGAGAACACTTGTTATTGGAATGAGAGACTTGAATGCTTCAGAATTTGAGAAATGGCATGCGTCCTTCGAGGCTGCAAGCACTGCTGTTTTTGGCAGGGCTGCTATGCTCCGCAAGGTTTCTAGCATTGTAGAGAACAGTCTCAGCATATTAGGAGCATCTGCCATTGAAGATAAACTGCAACAAGGTGTGCCTGAATCCATTGAGTCTCTAAGGATTGCAGGGATTAAAGTGTGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTCCTTACAAGCAAAATGAATCAGATTATAATCAACAGCAACAACAGAGCAGCATGCAGAAAAAGTTTGCAAGATGCCCTTGTCATGTCTAAAAAGCTCATGTCCACATCTAGCGTTGCCAACAATTCTGGAGGAAGTTCAGAGGCAAATCCAATAGCCTTGATAATTGATGGTACCAGTCTTGTGCATATTCTTGACAGTGAACTTGAAGAAGAGCTATTTCAACTTGCAAGTAGATGTTCTGTTGTTCTATGTTGCCGAGTTGCTCCACTGCAAAAGGCTGGCATTGTTGCCCTTGTGAAGAATAGGACATCAGACATGACTCTAGCCATTGGAGACGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGTCGGCAAGCAGTAATGGCATCTGATTTTGCAATGGGGCAGTTTAGAAGTATTCCTCCAGATCTTAACATGTTGGTAAATTTGTTATGTGTATGTGTTTGTAGGTATGTGCTCTACACTGCTTTCACTTTGACAACTGCCATAAATGAATGGAGCACGACGTTATACTCAATAGTCTACAGCTCATTACCAACTATAGTTGTTGCTATTCTAGACAAGGATCTCGGTAAAAGGACACTCCTAAAGTACCCTCAACTTTACGGGGCAGGTCAGAGACATGAGGCCTACAACAAGAAACTGTTTGCCTTGACAATGTTAGATACTTTGTGGCAAAGCATGGTCATTTTCTGGGCACCCCTCTTTGCATATTGGAGCAGCACAGTCGATGTGTCAAGCATTGGAGACCTTTGGACTTTTGGGGTTGTTATTTTGGTGAATTTGCACTTGGCCATGGACGTTGTAAGGTGGTATTGGGTGACCCATGTTGCCATTTGGGGTTCTATTGTTGCAACTTTCATTAGTGTCATGATCATTGAAGCTTTTCCCAATCTTCCTGGCTACTGGGCCTTCTTCAATGCTGCAGGAACTGGATTGTTCTGGTTATTGTTGCTTGGAATCATAATAGCAGCATTGCTTCCACGTTTGGTTGTTAAATATGTTTATGAATATTATTTTCCCAATGATATTCAGATTTGTAGAGAAGGTGAGAAGATTGAGTATGAAAGAGTTGTTGAAAGTGCAGCAATAGAGATGCTTCCTATCTCAAACACTCCACCAAGATAA 3819 0.4336 MLTARTVWSTYMHDHQSFQTRRRPRSPEVEWLLKEEENWQKLCLIDVEEEPCKMNCVQELQNHPSHVFIATDSRIMGSKRPHVIMTPSTTASDNYQLDPFSVNIPELPTSNSSFGNVFINPFENSLVSSSSRRSSMSNRSSGSKSNNSIHEVSLSGSASKSIPVRYGSKGADSEGLSVSQRELRDEDARLVYINDPLKTNETFLFAGNSIRTSKYSLLSFIPRNLFEQFHRIAYVYFLIIAILNQLPQLAVFGRAVSILPLSFVLFVTAVKDAYEDWRRHGSDKVENNRLASVLVDGNFLEKSWRDIRVGEVIKIKANEPIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGKEGFGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTSWAIGVAAYCGSETKAMLNSSGAPSKRSRLETRMNFEIIWLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSEEGQVESYEYYGWGLEVLFTFLMSVIVFQVMIPISLYISMELVRVGQAFFMIRDNRMYDEETKSRFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYSPTENGMEGDQVEHSVEVDGKVFRPKMKVKVNPELLQLARSGFLNLEGKRIHDFFLALATCNTIVPIVVDSPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGKRQKFNVLGMHEFDSDRKRMSVILGYPDNSVKVFVKGADTSMLNVIDKSFSMDLVRATEAHLHSYSSIGLRTLVIGMRDLNASEFEKWHASFEAASTAVFGRAAMLRKVSSIVENSLSILGASAIEDKLQQGVPESIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTSKMNQIIINSNNRAACRKSLQDALVMSKKLMSTSSVANNSGGSSEANPIALIIDGTSLVHILDSELEEELFQLASRCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRSIPPDLNMLVNLLCVCVCRYVLYTAFTLTTAINEWSTTLYSIVYSSLPTIVVAILDKDLGKRTLLKYPQLYGAGQRHEAYNKKLFALTMLDTLWQSMVIFWAPLFAYWSSTVDVSSIGDLWTFGVVILVNLHLAMDVVRWYWVTHVAIWGSIVATFISVMIIEAFPNLPGYWAFFNAAGTGLFWLLLLGIIIAALLPRLVVKYVYEYYFPNDIQICREGEKIEYERVVESAAIEMLPISNTPPR 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02229 1272 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 578 842 IPR023299 GO:0000166
Vimu4g02229 1272 FunFam Phospholipid-transporting ATPase 676 809 - -
Vimu4g02229 1272 NCBIfam HAD-IC family P-type ATPase 504 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g02229 1272 NCBIfam HAD-IC family P-type ATPase 960 1080 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g02229 1272 ProSitePatterns E1-E2 ATPases phosphorylation site. 574 580 IPR018303 -
Vimu4g02229 1272 FunFam Phospholipid-transporting ATPase 828 1029 - -
Vimu4g02229 1272 SUPERFAMILY HAD-like 559 1024 IPR036412 -
Vimu4g02229 1272 SFLD Haloacid Dehalogenase 556 1031 - -
Vimu4g02229 1272 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 180 1251 - -
Vimu4g02229 1272 Pfam Cation transport ATPase (P-type) 667 755 - -
Vimu4g02229 1272 Gene3D - 677 808 IPR023299 GO:0000166
Vimu4g02229 1272 MobiDBLite consensus disorder prediction 129 156 - -
Vimu4g02229 1272 SUPERFAMILY Calcium ATPase, transduction domain A 288 425 IPR008250 -
Vimu4g02229 1272 Gene3D - 264 428 - -
Vimu4g02229 1272 PRINTS P-type cation-transporting ATPase superfamily signature 572 586 - -
Vimu4g02229 1272 PRINTS P-type cation-transporting ATPase superfamily signature 989 1008 - -
Vimu4g02229 1272 SUPERFAMILY Calcium ATPase, transmembrane domain M 205 1238 IPR023298 -
Vimu4g02229 1272 Pfam Phospholipid-translocating ATPase N-terminal 191 257 IPR032631 -
Vimu4g02229 1272 Gene3D - 828 1027 IPR023214 -
Vimu4g02229 1272 SFLD p-type atpase 556 1031 IPR044492 -
Vimu4g02229 1272 FunFam Phospholipid-transporting ATPase 263 428 - -
Vimu4g02229 1272 Pfam Phospholipid-translocating P-type ATPase C-terminal 1041 1239 IPR032630 -
Vimu4g02229 1272 NCBIfam phospholipid-translocating P-type ATPase 205 1246 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02229 Vimu-Chr4 24376570 24384838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02229 136 1272 Primary Pumps ATPases AT5G04930 64.625 0.0 1563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02229 K14802 - gmx:100813982 1970.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02229 4 24376570 24384838 Vimu4g02229 4 24376570 24384838 ECH