Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02224 ATGAGTTTACCTCATCACAATGAAGCACCAGCATGGCTTCCTTCAAAAGATAGGAGGCTCCTTCTGACAGAGGATTTGAGGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAGAAAATTTCTGATGCACTTAAACATGTTCCTGATAAGAGCAACAAGAGGACTGTGATCTATGTGAAAAAAGGGATTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGAATGACTTCTACTGTTGTATCTGCCAACCTTAATTTTGTGGATGGCACACCAACTTTTTCAACAGCAACATTTGGTAAGTGA 345 0.3971 MSLPHHNEAPAWLPSKDRRLLLTEDLRKKADIVVAKDGSGKYKKISDALKHVPDKSNKRTVIYVKKGIYYENVRVEKTKWNVMMIGDGMTSTVVSANLNFVDGTPTFSTATFGK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02224 114 Pfam Pectinesterase 31 113 IPR000070 GO:0030599|GO:0042545
Vimu4g02224 114 Gene3D - 26 114 IPR012334 -
Vimu4g02224 114 PANTHER PECTINESTERASE 11 113 - -
Vimu4g02224 114 SUPERFAMILY Pectin lyase-like 29 112 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02224 Vimu-Chr4 24349944 24350288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02224 18 113 Carbohydrate Esterase AT5G04960 69.792 9.80e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02224 - - gmx:100811152 201.06